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Results: 1 to 20 of 28

1.

Complete genome sequence of the biocontrol strain Pseudomonas protegens Cab57 discovered in Japan reveals strain-specific diversity of this species.

Takeuchi K, Noda N, Someya N.

PLoS One. 2014 Apr 2;9(4):e93683. doi: 10.1371/journal.pone.0093683. eCollection 2014.

PMID:
24695768
[PubMed - in process]
Free PMC Article
2.

Pseudomonas putida CSV86: a candidate genome for genetic bioaugmentation.

Paliwal V, Raju SC, Modak A, Phale PS, Purohit HJ.

PLoS One. 2014 Jan 24;9(1):e84000. doi: 10.1371/journal.pone.0084000. eCollection 2014.

PMID:
24475028
[PubMed - in process]
Free PMC Article
3.

First Whole-Genome Sequence of Mycobacterium iranicum, a Newly Reported Mycobacterial Species.

Tan JL, Ng HF, Wee WY, Ang MY, Wong GJ, Ngeow YF, Choo SW.

Genome Announc. 2013 Sep 26;1(5). pii: e00732-13. doi: 10.1128/genomeA.00732-13.

PMID:
24072861
[PubMed]
Free PMC Article
4.

Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease.

McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Rainey PB, Templeton MD.

PLoS Pathog. 2013;9(7):e1003503. doi: 10.1371/journal.ppat.1003503. Epub 2013 Jul 25. Erratum in: PLoS Pathog. 2013;9(9). doi:10.1371/annotation/af157ddc-200a-4105-b243-3f01251cc677. Vanneste, Joel [corrected to Vanneste, Joel L].

PMID:
23935484
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

IslandViewer update: Improved genomic island discovery and visualization.

Dhillon BK, Chiu TA, Laird MR, Langille MG, Brinkman FS.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W129-32. doi: 10.1093/nar/gkt394. Epub 2013 May 15.

PMID:
23677610
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Surface display of a massively variable lipoprotein by a Legionella diversity-generating retroelement.

Arambula D, Wong W, Medhekar BA, Guo H, Gingery M, Czornyj E, Liu M, Dey S, Ghosh P, Miller JF.

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8212-7. doi: 10.1073/pnas.1301366110. Epub 2013 Apr 30.

PMID:
23633572
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4.

Duan J, Jiang W, Cheng Z, Heikkila JJ, Glick BR.

PLoS One. 2013;8(3):e58640. doi: 10.1371/journal.pone.0058640. Epub 2013 Mar 13.

PMID:
23516524
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A phyletically rare gene promotes the niche-specific fitness of an E. coli pathogen during bacteremia.

Wiles TJ, Norton JP, Smith SN, Lewis AJ, Mobley HL, Casjens SR, Mulvey MA.

PLoS Pathog. 2013 Feb;9(2):e1003175. doi: 10.1371/journal.ppat.1003175. Epub 2013 Feb 14.

PMID:
23459509
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.

Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B.

PLoS One. 2013;8(2):e55644. doi: 10.1371/journal.pone.0055644. Epub 2013 Feb 7.

PMID:
23409014
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Ecology of marine Bacteroidetes: a comparative genomics approach.

Fernández-Gómez B, Richter M, Schüler M, Pinhassi J, Acinas SG, González JM, Pedrós-Alió C.

ISME J. 2013 May;7(5):1026-37. doi: 10.1038/ismej.2012.169. Epub 2013 Jan 10.

PMID:
23303374
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Stability of a Pseudomonas putida KT2440 bacteriophage-carried genomic island and its impact on rhizosphere fitness.

Quesada JM, Soriano MI, Espinosa-Urgel M.

Appl Environ Microbiol. 2012 Oct;78(19):6963-74. doi: 10.1128/AEM.00901-12. Epub 2012 Jul 27.

PMID:
22843519
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Patterns and architecture of genomic islands in marine bacteria.

Fernández-Gómez B, Fernàndez-Guerra A, Casamayor EO, González JM, Pedrós-Alió C, Acinas SG.

BMC Genomics. 2012 Jul 29;13:347. doi: 10.1186/1471-2164-13-347.

PMID:
22839777
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Prediction of genomic islands in three bacterial pathogens of pneumonia.

Guo FB, Wei W.

Int J Mol Sci. 2012;13(3):3134-44. doi: 10.3390/ijms13033134. Epub 2012 Mar 7.

PMID:
22489145
[PubMed]
Free PMC Article
14.

High-density transcriptional initiation signals underline genomic islands in bacteria.

Huang Q, Cheng X, Cheung MK, Kiselev SS, Ozoline ON, Kwan HS.

PLoS One. 2012;7(3):e33759. doi: 10.1371/journal.pone.0033759. Epub 2012 Mar 20.

PMID:
22448273
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

GIST: Genomic island suite of tools for predicting genomic islands in genomic sequences.

Hasan MS, Liu Q, Wang H, Fazekas J, Chen B, Che D.

Bioinformation. 2012;8(4):203-5. doi: 10.6026/97320630008203. Epub 2012 Feb 28.

PMID:
22419842
[PubMed]
Free PMC Article
16.

EGID: an ensemble algorithm for improved genomic island detection in genomic sequences.

Che D, Hasan MS, Wang H, Fazekas J, Huang J, Liu Q.

Bioinformation. 2011;7(6):311-4. Epub 2011 Nov 20.

PMID:
22355228
[PubMed]
Free PMC Article
17.

IGIPT - Integrated genomic island prediction tool.

Jain R, Ramineni S, Parekh N.

Bioinformation. 2011;7(6):307-10. Epub 2011 Nov 20.

PMID:
22355227
[PubMed]
Free PMC Article
18.

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands.

Bohlin J, van Passel MW, Snipen L, Kristoffersen AB, Ussery D, Hardy SP.

BMC Genomics. 2012 Feb 10;13:66. doi: 10.1186/1471-2164-13-66.

PMID:
22325062
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Tracing common origins of Genomic Islands in prokaryotes based on genome signature analyses.

van Passel MW.

Mob Genet Elements. 2011 Sep;1(3):247-249. Epub 2011 Sep 1.

PMID:
22312594
[PubMed]
Free PMC Article
20.

Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses.

Siddaramappa S, Challacombe JF, Duncan AJ, Gillaspy AF, Carson M, Gipson J, Orvis J, Zaitshik J, Barnes G, Bruce D, Chertkov O, Detter JC, Han CS, Tapia R, Thompson LS, Dyer DW, Inzana TJ.

BMC Genomics. 2011 Nov 23;12:570. doi: 10.1186/1471-2164-12-570.

PMID:
22111657
[PubMed - indexed for MEDLINE]
Free PMC Article

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