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Results: 1 to 20 of 267

1.

Computational characterisation of cancer molecular profiles derived using next generation sequencing.

Oleksiewicz U, Tomczak K, Woropaj J, Markowska M, Stępniak P, Shah PK.

Contemp Oncol (Pozn). 2015;19(1A):A78-91. doi: 10.5114/wo.2014.47137. Review.

PMID:
25691827
[PubMed]
Free PMC Article
2.

An Island-Based Approach for Differential Expression Analysis.

Eteleeb AM, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

ACM Conf Bioinform Comput Biol Biomed Inform (2013). 2013 Dec 31;2013:419-429.

PMID:
25632406
[PubMed]
Free PMC Article
3.

Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638.

Taghavi S, Wu X, Ouyang L, Zhang YB, Stadler A, McCorkle S, Zhu W, Maslov S, van der Lelie D.

PLoS One. 2015 Jan 21;10(1):e0115455. doi: 10.1371/journal.pone.0115455. eCollection 2015.

PMID:
25607953
[PubMed - in process]
Free PMC Article
4.

De novo assembly of bacterial transcriptomes from RNA-seq data.

Tjaden B.

Genome Biol. 2015 Jan 13;16(1):1. [Epub ahead of print]

PMID:
25583448
[PubMed - as supplied by publisher]
Free PMC Article
5.

LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data.

Lin B, Zhang LF, Chen X.

BMC Genomics. 2014;15 Suppl 10:S7. doi: 10.1186/1471-2164-15-S10-S7. Epub 2014 Dec 12.

PMID:
25560842
[PubMed - in process]
Free PMC Article
6.

A note on an exon-based strategy to identify differentially expressed genes in RNA-seq experiments.

Laiho A, Elo LL.

PLoS One. 2014 Dec 26;9(12):e115964. doi: 10.1371/journal.pone.0115964. eCollection 2014.

PMID:
25541961
[PubMed - in process]
Free PMC Article
7.

The importance of study design for detecting differentially abundant features in high-throughput experiments.

Luo H, Li J, Chia BK, Robson P, Nagarajan N.

Genome Biol. 2014 Dec 3;15(12):527. doi: 10.1186/s13059-014-0527-7.

PMID:
25517037
[PubMed - in process]
Free PMC Article
8.

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.

Liu R, Loraine AE, Dickerson JA.

BMC Bioinformatics. 2014 Dec 16;15(1):364. [Epub ahead of print]

PMID:
25511303
[PubMed - as supplied by publisher]
Free PMC Article
9.

Comparative evaluation of gene set analysis approaches for RNA-Seq data.

Rahmatallah Y, Emmert-Streib F, Glazko G.

BMC Bioinformatics. 2014 Dec 5;15(1):397. [Epub ahead of print]

PMID:
25475910
[PubMed - as supplied by publisher]
Free PMC Article
10.

Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates.

Al Seesi S, Tiagueu YT, Zelikovsky A, Măndoiu II.

BMC Genomics. 2014;15 Suppl 8:S2. doi: 10.1186/1471-2164-15-S8-S2. Epub 2014 Nov 13.

PMID:
25435284
[PubMed - in process]
Free PMC Article
11.

Distinct transcriptional profiles of ozone stress in soybean ( Glycine max ) flowers and pods.

Leisner CP, Ming R, Ainsworth EA.

BMC Plant Biol. 2014 Nov 28;14(1):335. [Epub ahead of print]

PMID:
25430603
[PubMed - as supplied by publisher]
Free PMC Article
12.

Transfer of clinically relevant gene expression signatures in breast cancer: from Affymetrix microarray to Illumina RNA-Sequencing technology.

Fumagalli D, Blanchet-Cohen A, Brown D, Desmedt C, Gacquer D, Michiels S, Rothé F, Majjaj S, Salgado R, Larsimont D, Ignatiadis M, Maetens M, Piccart M, Detours V, Sotiriou C, Haibe-Kains B.

BMC Genomics. 2014 Nov 21;15:1008. doi: 10.1186/1471-2164-15-1008.

PMID:
25412710
[PubMed - in process]
Free PMC Article
13.

Network-based identification of biomarkers coexpressed with multiple pathways.

Guo NL, Wan YW.

Cancer Inform. 2014 Oct 16;13(Suppl 5):37-47. doi: 10.4137/CIN.S14054. eCollection 2014. Review.

PMID:
25392692
[PubMed]
Free PMC Article
14.

Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus.

Wiemann P, Lechner BE, Baccile JA, Velk TA, Yin WB, Bok JW, Pakala S, Losada L, Nierman WC, Schroeder FC, Haas H, Keller NP.

Front Microbiol. 2014 Oct 24;5:530. doi: 10.3389/fmicb.2014.00530. eCollection 2014.

PMID:
25386169
[PubMed]
Free PMC Article
15.

miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation.

Cer RZ, Herrera-Galeano JE, Anderson JJ, Bishop-Lilly KA, Mokashi VP.

Gigascience. 2014 Oct 13;3:20. doi: 10.1186/2047-217X-3-20. eCollection 2014.

PMID:
25379175
[PubMed]
Free PMC Article
16.

Isolation of specific neurons from C. elegans larvae for gene expression profiling.

Spencer WC, McWhirter R, Miller T, Strasbourger P, Thompson O, Hillier LW, Waterston RH, Miller DM 3rd.

PLoS One. 2014 Nov 5;9(11):e112102. doi: 10.1371/journal.pone.0112102. eCollection 2014.

PMID:
25372608
[PubMed - in process]
Free PMC Article
17.

Prevalence, evolution, and cis-regulation of diel transcription in Chlamydomonas reinhardtii.

Panchy N, Wu G, Newton L, Tsai CH, Chen J, Benning C, Farré EM, Shiu SH.

G3 (Bethesda). 2014 Oct 28;4(12):2461-71. doi: 10.1534/g3.114.015032.

PMID:
25354782
[PubMed - in process]
Free PMC Article
18.

Maize and millet transcription factors annotated using comparative genomic and transcriptomic data.

Lin JJ, Yu CP, Chang YM, Chen SC, Li WH.

BMC Genomics. 2014 Sep 27;15:818. doi: 10.1186/1471-2164-15-818.

PMID:
25261191
[PubMed - in process]
Free PMC Article
19.

Statistical strategies for microRNAseq batch effect reduction.

Guo Y, Zhao S, Su PF, Li CI, Ye F, Flynn CR, Shyr Y.

Transl Cancer Res. 2014 Jun 1;3(3):260-265.

PMID:
25258704
[PubMed]
Free PMC Article
20.

Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions.

McClure R, Tjaden B, Genco C.

Front Microbiol. 2014 Aug 28;5:456. doi: 10.3389/fmicb.2014.00456. eCollection 2014.

PMID:
25221548
[PubMed]
Free PMC Article
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