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Results: 19

1.

Differential Transcriptional Effects of EGFR Inhibitors.

Blumenberg M.

PLoS One. 2014 Sep 3;9(9):e102466. doi: 10.1371/journal.pone.0102466. eCollection 2014.

PMID:
25184905
[PubMed - in process]
Free PMC Article
2.

Proteomics analysis of the non-muscle myosin heavy chain IIa-enriched actin-myosin complex reveals multiple functions within the podocyte.

Hays T, Ma'ayan A, Clark NR, Tan CM, Teixeira A, Teixeira A, Choi JW, Burdis N, Jung SY, Bajaj AO, O'Malley BW, He JC, Hyink DP, Klotman PE.

PLoS One. 2014 Jun 20;9(6):e100660. doi: 10.1371/journal.pone.0100660. eCollection 2014.

PMID:
24949636
[PubMed - in process]
Free PMC Article
3.

Reanalysis of the gene expression profile in chronic pancreatitis via bioinformatics methods.

Yuan H, Wu B, Ma S, Yang X, Yin L, Li A.

Eur J Med Res. 2014 May 29;19:31. doi: 10.1186/2047-783X-19-31.

PMID:
24886751
[PubMed - in process]
Free PMC Article
4.

gsGator: an integrated web platform for cross-species gene set analysis.

Kang H, Choi I, Cho S, Ryu D, Lee S, Kim W.

BMC Bioinformatics. 2014 Jan 14;15:13. doi: 10.1186/1471-2105-15-13.

PMID:
24423189
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

ELK1 transcription factor linked to dysregulated striatal mu opioid receptor signaling network and OPRM1 polymorphism in human heroin abusers.

Sillivan SE, Whittard JD, Jacobs MM, Ren Y, Mazloom AR, Caputi FF, Horvath M, Keller E, Ma'ayan A, Pan YX, Chiang LW, Hurd YL.

Biol Psychiatry. 2013 Oct 1;74(7):511-9. doi: 10.1016/j.biopsych.2013.04.012. Epub 2013 May 20.

PMID:
23702428
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.

Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A.

BMC Bioinformatics. 2013 Apr 15;14:128. doi: 10.1186/1471-2105-14-128.

PMID:
23586463
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Renoprotective effect of combined inhibition of angiotensin-converting enzyme and histone deacetylase.

Zhong Y, Chen EY, Liu R, Chuang PY, Mallipattu SK, Tan CM, Clark NR, Deng Y, Klotman PE, Ma'ayan A, He JC.

J Am Soc Nephrol. 2013 Apr;24(5):801-11. doi: 10.1681/ASN.2012060590. Epub 2013 Apr 4.

PMID:
23559582
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Profiling and metaanalysis of epidermal keratinocytes responses to epidermal growth factor.

Blumenberg M.

BMC Genomics. 2013 Feb 8;14:85. doi: 10.1186/1471-2164-14-85.

PMID:
23391100
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

atBioNet--an integrated network analysis tool for genomics and biomarker discovery.

Ding Y, Chen M, Liu Z, Ding D, Ye Y, Zhang M, Kelly R, Guo L, Su Z, Harris SC, Qian F, Ge W, Fang H, Xu X, Tong W.

BMC Genomics. 2012 Jul 20;13:325. doi: 10.1186/1471-2164-13-325.

PMID:
22817640
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genes2FANs: connecting genes through functional association networks.

Dannenfelser R, Clark NR, Ma'ayan A.

BMC Bioinformatics. 2012 Jul 2;13:156. doi: 10.1186/1471-2105-13-156.

PMID:
22748121
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability.

Kou Y, Betancur C, Xu H, Buxbaum JD, Ma'ayan A.

Am J Med Genet C Semin Med Genet. 2012 May 15;160C(2):130-42. doi: 10.1002/ajmg.c.31330. Epub 2012 Apr 12.

PMID:
22499558
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

IPAVS: Integrated Pathway Resources, Analysis and Visualization System.

Sreenivasaiah PK, Rani S, Cayetano J, Arul N, Kim do H.

Nucleic Acids Res. 2012 Jan;40(Database issue):D803-8. doi: 10.1093/nar/gkr1208. Epub 2011 Dec 2. Erratum in: Nucleic Acids Res. 2012 Sep;40(16):8197.

PMID:
22140115
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Introduction to network analysis in systems biology.

Ma'ayan A.

Sci Signal. 2011 Sep 6;4(190):tr5. doi: 10.1126/scisignal.2001965.

PMID:
21917719
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Systems biology--biomedical modeling.

Sobie EA, Lee YS, Jenkins SL, Iyengar R.

Sci Signal. 2011 Sep 6;4(190):tr2. doi: 10.1126/scisignal.2001989. Review.

PMID:
21917716
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Systems biology of kidney diseases.

He JC, Chuang PY, Ma'ayan A, Iyengar R.

Kidney Int. 2012 Jan;81(1):22-39. doi: 10.1038/ki.2011.314. Epub 2011 Aug 31. Review.

PMID:
21881558
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli.

Morris MK, Saez-Rodriguez J, Clarke DC, Sorger PK, Lauffenburger DA.

PLoS Comput Biol. 2011 Mar;7(3):e1001099. doi: 10.1371/journal.pcbi.1001099. Epub 2011 Mar 3.

PMID:
21408212
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

GARNET--gene set analysis with exploration of annotation relations.

Rho K, Kim B, Jang Y, Lee S, Bae T, Seo J, Seo C, Lee J, Kang H, Yu U, Kim S, Lee S, Kim WK.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S25. doi: 10.1186/1471-2105-12-S1-S25.

PMID:
21342555
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Toward a complete in silico, multi-layered embryonic stem cell regulatory network.

Xu H, Schaniel C, Lemischka IR, Ma'ayan A.

Wiley Interdiscip Rev Syst Biol Med. 2010 Nov-Dec;2(6):708-33. doi: 10.1002/wsbm.93. Review.

PMID:
20890967
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Protein kinase target discovery from genome-wide messenger RNA expression profiling.

Ma'ayan A, He JC.

Mt Sinai J Med. 2010 Jul-Aug;77(4):345-9. doi: 10.1002/msj.20192.

PMID:
20687179
[PubMed - indexed for MEDLINE]
Free PMC Article

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