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Results: 9

1.

How the dynamics and structure of sexual contact networks shape pathogen phylogenies.

Robinson K, Fyson N, Cohen T, Fraser C, Colijn C.

PLoS Comput Biol. 2013;9(6):e1003105. doi: 10.1371/journal.pcbi.1003105. Epub 2013 Jun 20.

PMID:
23818840
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Viral phylodynamics.

Volz EM, Koelle K, Bedford T.

PLoS Comput Biol. 2013;9(3):e1002947. doi: 10.1371/journal.pcbi.1002947. Epub 2013 Mar 21. Review.

PMID:
23555203
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics.

Magiorkinis G, Sypsa V, Magiorkinis E, Paraskevis D, Katsoulidou A, Belshaw R, Fraser C, Pybus OG, Hatzakis A.

PLoS Comput Biol. 2013;9(1):e1002876. doi: 10.1371/journal.pcbi.1002876. Epub 2013 Jan 31.

PMID:
23382662
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study.

Ratmann O, Donker G, Meijer A, Fraser C, Koelle K.

PLoS Comput Biol. 2012;8(12):e1002835. doi: 10.1371/journal.pcbi.1002835. Epub 2012 Dec 27.

PMID:
23300420
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Inferring pandemic growth rates from sequence data.

de Silva E, Ferguson NM, Fraser C.

J R Soc Interface. 2012 Aug 7;9(73):1797-808. doi: 10.1098/rsif.2011.0850. Epub 2012 Feb 15.

PMID:
22337627
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The evolution of HIV: inferences using phylogenetics.

Castro-Nallar E, PĂ©rez-Losada M, Burton GF, Crandall KA.

Mol Phylogenet Evol. 2012 Feb;62(2):777-92. doi: 10.1016/j.ympev.2011.11.019. Epub 2011 Nov 27. Review.

PMID:
22138161
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Inference for nonlinear epidemiological models using genealogies and time series.

Rasmussen DA, Ratmann O, Koelle K.

PLoS Comput Biol. 2011 Aug;7(8):e1002136. doi: 10.1371/journal.pcbi.1002136. Epub 2011 Aug 25.

PMID:
21901082
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Contact heterogeneity and phylodynamics: how contact networks shape parasite evolutionary trees.

O'Dea EB, Wilke CO.

Interdiscip Perspect Infect Dis. 2011;2011:238743. doi: 10.1155/2011/238743. Epub 2010 Dec 1.

PMID:
21151699
[PubMed]
Free PMC Article
9.

Viral phylodynamics and the search for an 'effective number of infections'.

Frost SD, Volz EM.

Philos Trans R Soc Lond B Biol Sci. 2010 Jun 27;365(1548):1879-90. doi: 10.1098/rstb.2010.0060.

PMID:
20478883
[PubMed - indexed for MEDLINE]
Free PMC Article

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