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Results: 15

Cited In for PubMed (Select 20113528)


ptRNApred: computational identification and classification of post-transcriptional RNA.

Gupta Y, Witte M, Möller S, Ludwig RJ, Restle T, Zillikens D, Ibrahim SM.

Nucleic Acids Res. 2014 Dec 16;42(22):e167. doi: 10.1093/nar/gku918. Epub 2014 Oct 10.


Small non-coding RNA profiling and the role of piRNA pathway genes in the protection of chicken primordial germ cells.

Rengaraj D, Lee SI, Park TS, Lee HJ, Kim YM, Sohn YA, Jung M, Noh SJ, Jung H, Han JY.

BMC Genomics. 2014 Sep 4;15:757. doi: 10.1186/1471-2164-15-757.


Underreplicated regions in Drosophila melanogaster are enriched with fast-evolving genes and highly conserved noncoding sequences.

Makunin IV, Kolesnikova TD, Andreyenkova NG.

Genome Biol Evol. 2014 Jul 24;6(8):2050-60. doi: 10.1093/gbe/evu156.


Vicinal: a method for the determination of ncRNA ends using chimeric reads from RNA-seq experiments.

Lu Z, Matera AG.

Nucleic Acids Res. 2014 May;42(9):e79. doi: 10.1093/nar/gku207. Epub 2014 Mar 12.


RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins.

Lu Z, Guan X, Schmidt CA, Matera AG.

Genome Biol. 2014 Jan 7;15(1):R7. doi: 10.1186/gb-2014-15-1-r7.


Sequence and expression characteristics of long noncoding RNAs in honey bee caste development--potential novel regulators for transgressive ovary size.

Humann FC, Tiberio GJ, Hartfelder K.

PLoS One. 2013 Oct 31;8(10):e78915. doi: 10.1371/journal.pone.0078915. eCollection 2013.


MicroRNA discovery by similarity search to a database of RNA-seq profiles.

Pundhir S, Gorodkin J.

Front Genet. 2013 Jul 11;4:133. doi: 10.3389/fgene.2013.00133. eCollection 2013.


Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing.

Kishore S, Gruber AR, Jedlinski DJ, Syed AP, Jorjani H, Zavolan M.

Genome Biol. 2013 May 26;14(5):R45. doi: 10.1186/gb-2013-14-5-r45.


Differential microRNA response to a high-cholesterol, high-fat diet in livers of low and high LDL-C baboons.

Karere GM, Glenn JP, VandeBerg JL, Cox LA.

BMC Genomics. 2012 Jul 18;13:320. doi: 10.1186/1471-2164-13-320.


Novel insight into the non-coding repertoire through deep sequencing analysis.

Isakov O, Ronen R, Kovarsky J, Gabay A, Gan I, Modai S, Shomron N.

Nucleic Acids Res. 2012 Jun;40(11):e86. doi: 10.1093/nar/gks228. Epub 2012 Mar 9.


deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.

Langenberger D, Pundhir S, Ekstrøm CT, Stadler PF, Hoffmann S, Gorodkin J.

Bioinformatics. 2012 Jan 1;28(1):17-24. doi: 10.1093/bioinformatics/btr598. Epub 2011 Nov 3.


A survey of small RNAs in human sperm.

Krawetz SA, Kruger A, Lalancette C, Tagett R, Anton E, Draghici S, Diamond MP.

Hum Reprod. 2011 Dec;26(12):3401-12. doi: 10.1093/humrep/der329. Epub 2011 Oct 11.


Deep sequencing of organ- and stage-specific microRNAs in the evolutionarily basal insect Blattella germanica (L.) (Dictyoptera, Blattellidae).

Cristino AS, Tanaka ED, Rubio M, Piulachs MD, Belles X.

PLoS One. 2011 Apr 28;6(4):e19350. doi: 10.1371/journal.pone.0019350.


Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.

Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, Reinke V, Gerstein MB.

Genome Res. 2011 Feb;21(2):276-85. doi: 10.1101/gr.110189.110. Epub 2010 Dec 22. Erratum in: Genome Res. 2011 May;21(5):811.

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