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Results: 1 to 20 of 26

1.

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions.

Brunner AL, Li J, Guo X, Sweeney RT, Varma S, Zhu SX, Li R, Tibshirani R, West RB.

Genome Biol. 2014 May 23;15(5):R71. [Epub ahead of print]

PMID:
24887547
[PubMed - as supplied by publisher]
Free PMC Article
2.

Copy number variation is a fundamental aspect of the placental genome.

Hannibal RL, Chuong EB, Rivera-Mulia JC, Gilbert DM, Valouev A, Baker JC.

PLoS Genet. 2014 May 1;10(5):e1004290. doi: 10.1371/journal.pgen.1004290. eCollection 2014 May.

PMID:
24785991
[PubMed - in process]
Free PMC Article
3.

Next generation DNA sequencing and the future of genomic medicine.

Anderson MW, Schrijver I.

Genes (Basel). 2010 May 25;1(1):38-69. doi: 10.3390/genes1010038.

PMID:
24710010
[PubMed]
Free PMC Article
4.

Sequencing degraded RNA addressed by 3' tag counting.

Sigurgeirsson B, Emanuelsson O, Lundeberg J.

PLoS One. 2014 Mar 14;9(3):e91851. doi: 10.1371/journal.pone.0091851. eCollection 2014.

PMID:
24632678
[PubMed - in process]
Free PMC Article
5.

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer.

Guo X, Zhu SX, Brunner AL, van de Rijn M, West RB.

Breast Cancer Res. 2013 Dec 17;15(6):R117. doi: 10.1186/bcr3586.

PMID:
24342436
[PubMed - in process]
Free PMC Article
6.

Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses.

Kenzelmann Broz D, Spano Mello S, Bieging KT, Jiang D, Dusek RL, Brady CA, Sidow A, Attardi LD.

Genes Dev. 2013 May 1;27(9):1016-31. doi: 10.1101/gad.212282.112.

PMID:
23651856
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans.

Van Nostrand EL, Sánchez-Blanco A, Wu B, Nguyen A, Kim SK.

PLoS Genet. 2013;9(2):e1003325. doi: 10.1371/journal.pgen.1003325. Epub 2013 Feb 28.

PMID:
23468654
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Endogenous retroviruses function as species-specific enhancer elements in the placenta.

Chuong EB, Rumi MA, Soares MJ, Baker JC.

Nat Genet. 2013 Mar;45(3):325-9. doi: 10.1038/ng.2553. Epub 2013 Feb 10.

PMID:
23396136
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

All's well that ends well: alternative polyadenylation and its implications for stem cell biology.

Mueller AA, Cheung TH, Rando TA.

Curr Opin Cell Biol. 2013 Apr;25(2):222-32. doi: 10.1016/j.ceb.2012.12.008. Epub 2013 Jan 25. Review.

PMID:
23357469
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide maps of polyadenylation reveal dynamic mRNA 3'-end formation in mammalian cell lineages.

Wang L, Dowell RD, Yi R.

RNA. 2013 Mar;19(3):413-25. doi: 10.1261/rna.035360.112. Epub 2013 Jan 16.

PMID:
23325109
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

An efficient method for genome-wide polyadenylation site mapping and RNA quantification.

Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM.

Nucleic Acids Res. 2013 Mar 1;41(5):e65. doi: 10.1093/nar/gks1249. Epub 2013 Jan 7. Erratum in: Nucleic Acids Res. 2013 Jul;41(12):6370.

PMID:
23295673
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Temporal dynamics of the transcriptional response to dengue virus infection in Nicaraguan children.

Popper SJ, Gordon A, Liu M, Balmaseda A, Harris E, Relman DA.

PLoS Negl Trop Dis. 2012;6(12):e1966. doi: 10.1371/journal.pntd.0001966. Epub 2012 Dec 20.

PMID:
23285306
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data.

Yuan Y, Norris C, Xu Y, Tsui KW, Ji Y, Liang H.

BMC Genomics. 2012;13 Suppl 8:S9. doi: 10.1186/1471-2164-13-S8-S9. Epub 2012 Dec 17.

PMID:
23281802
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

High-throughput RNA sequencing of a formalin-fixed, paraffin-embedded autopsy lung tissue sample from the 1918 influenza pandemic.

Xiao YL, Kash JC, Beres SB, Sheng ZM, Musser JM, Taubenberger JK.

J Pathol. 2013 Mar;229(4):535-45. doi: 10.1002/path.4145.

PMID:
23180419
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D.

Ladner JT, Barshis DJ, Palumbi SR.

BMC Evol Biol. 2012 Nov 12;12:217. doi: 10.1186/1471-2148-12-217.

PMID:
23145489
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Transcriptome sequencing in Sezary syndrome identifies Sezary cell and mycosis fungoides-associated lncRNAs and novel transcripts.

Lee CS, Ungewickell A, Bhaduri A, Qu K, Webster DE, Armstrong R, Weng WK, Aros CJ, Mah A, Chen RO, Lin M, Sundram U, Chang HY, Kretz M, Kim YH, Khavari PA.

Blood. 2012 Oct 18;120(16):3288-97. doi: 10.1182/blood-2012-04-423061. Epub 2012 Aug 30.

PMID:
22936659
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Rejuvenation of gene expression pattern of aged human skin by broadband light treatment: a pilot study.

Chang AL, Bitter PH Jr, Qu K, Lin M, Rapicavoli NA, Chang HY.

J Invest Dermatol. 2013 Feb;133(2):394-402. doi: 10.1038/jid.2012.287. Epub 2012 Aug 30. Erratum in: J Invest Dermatol. 2013 Jun;133(6):1691.

PMID:
22931923
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers.

Brunner AL, Beck AH, Edris B, Sweeney RT, Zhu SX, Li R, Montgomery K, Varma S, Gilks T, Guo X, Foley JW, Witten DM, Giacomini CP, Flynn RA, Pollack JR, Tibshirani R, Chang HY, van de Rijn M, West RB.

Genome Biol. 2012 Aug 28;13(8):R75. [Epub ahead of print]

PMID:
22929540
[PubMed - as supplied by publisher]
Free PMC Article
19.

Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue.

Morlan JD, Qu K, Sinicropi DV.

PLoS One. 2012;7(8):e42882. doi: 10.1371/journal.pone.0042882. Epub 2012 Aug 10.

PMID:
22900061
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Mechanistic Roles of Noncoding RNAs in Lung Cancer Biology and Their Clinical Implications.

Enfield KS, Pikor LA, Martinez VD, Lam WL.

Genet Res Int. 2012;2012:737416. doi: 10.1155/2012/737416. Epub 2012 Jul 18.

PMID:
22852089
[PubMed]
Free PMC Article

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