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Comparison of phosphorylation patterns across eukaryotes by discriminative N-gram analysis.

Frades I, Resjö S, Andreasson E.

BMC Bioinformatics. 2015 Jul 30;16:239. doi: 10.1186/s12859-015-0657-2.


The Promise of Proteomics for the Study of ADP-Ribosylation.

Daniels CM, Ong SE, Leung AK.

Mol Cell. 2015 Jun 18;58(6):911-24. doi: 10.1016/j.molcel.2015.06.012. Review.


VRK1 regulates Cajal body dynamics and protects coilin from proteasomal degradation in cell cycle.

Cantarero L, Sanz-García M, Vinograd-Byk H, Renbaum P, Levy-Lahad E, Lazo PA.

Sci Rep. 2015 Jun 12;5:10543. doi: 10.1038/srep10543.


Application of quantitative proteomics to the integrated analysis of the ubiquitylated and global proteomes of xenograft tumor tissues.

Thomas SN, Zhang H, Cotter RJ.

Clin Proteomics. 2015 May 20;12(1):14. doi: 10.1186/s12014-015-9086-5. eCollection 2015.


SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets.

Petsalaki E, Helbig AO, Gopal A, Pasculescu A, Roth FP, Pawson T.

Nucleic Acids Res. 2015 Jul 1;43(W1):W276-82. doi: 10.1093/nar/gkv459. Epub 2015 May 6.


Neuroblastoma tyrosine kinase signaling networks involve FYN and LYN in endosomes and lipid rafts.

Palacios-Moreno J, Foltz L, Guo A, Stokes MP, Kuehn ED, George L, Comb M, Grimes ML.

PLoS Comput Biol. 2015 Apr 17;11(4):e1004130. doi: 10.1371/journal.pcbi.1004130. eCollection 2015 Apr.


A regulatory motif in nonmuscle myosin II-B regulates its role in migratory front-back polarity.

Juanes-Garcia A, Chapman JR, Aguilar-Cuenca R, Delgado-Arevalo C, Hodges J, Whitmore LA, Shabanowitz J, Hunt DF, Horwitz AR, Vicente-Manzanares M.

J Cell Biol. 2015 Apr 13;209(1):23-32. doi: 10.1083/jcb.201407059.


Phospho-tyrosine dependent protein-protein interaction network.

Grossmann A, Benlasfer N, Birth P, Hegele A, Wachsmuth F, Apelt L, Stelzl U.

Mol Syst Biol. 2015 Mar 26;11(3):794. doi: 10.15252/msb.20145968.


Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics.

Tsai CF, Wang YT, Yen HY, Tsou CC, Ku WC, Lin PY, Chen HY, Nesvizhskii AI, Ishihama Y, Chen YJ.

Nat Commun. 2015 Mar 27;6:6622. doi: 10.1038/ncomms7622.


Identification of U2AF(35)-dependent exons by RNA-Seq reveals a link between 3' splice-site organization and activity of U2AF-related proteins.

Kralovicova J, Knut M, Cross NC, Vorechovsky I.

Nucleic Acids Res. 2015 Apr 20;43(7):3747-63. doi: 10.1093/nar/gkv194. Epub 2015 Mar 16.


Characterization of the E. coli proteome and its modifications during growth and ethanol stress.

Soufi B, Krug K, Harst A, Macek B.

Front Microbiol. 2015 Feb 18;6:103. doi: 10.3389/fmicb.2015.00103. eCollection 2015.


The biology of IQGAP proteins: beyond the cytoskeleton.

Hedman AC, Smith JM, Sacks DB.

EMBO Rep. 2015 Apr;16(4):427-46. doi: 10.15252/embr.201439834. Epub 2015 Feb 26. Review.


Quantitative proteomic analysis of histone modifications.

Huang H, Lin S, Garcia BA, Zhao Y.

Chem Rev. 2015 Mar 25;115(6):2376-418. doi: 10.1021/cr500491u. Epub 2015 Feb 17. No abstract available.


Phosphorylation of targeting protein for Xenopus kinesin-like protein 2 (TPX2) at threonine 72 in spindle assembly.

Shim SY, Perez de Castro I, Neumayer G, Wang J, Park SK, Sanada K, Nguyen MD.

J Biol Chem. 2015 Apr 3;290(14):9122-34. doi: 10.1074/jbc.M114.591545. Epub 2015 Feb 16.


Defining the phospho-adhesome through the phosphoproteomic analysis of integrin signalling.

Robertson J, Jacquemet G, Byron A, Jones MC, Warwood S, Selley JN, Knight D, Humphries JD, Humphries MJ.

Nat Commun. 2015 Feb 13;6:6265. doi: 10.1038/ncomms7265.


HP1BP3 is a novel histone H1 related protein with essential roles in viability and growth.

Garfinkel BP, Melamed-Book N, Anuka E, Bustin M, Orly J.

Nucleic Acids Res. 2015 Feb 27;43(4):2074-90. doi: 10.1093/nar/gkv089. Epub 2015 Feb 8.


The emerging roles of GPRC5A in diseases.

Zhou H, Rigoutsos I.

Oncoscience. 2014 Nov 25;1(12):765-76. eCollection 2014. Review.


Post-translational modifications regulate class IIa histone deacetylase (HDAC) function in health and disease.

Mathias RA, Guise AJ, Cristea IM.

Mol Cell Proteomics. 2015 Mar;14(3):456-70. doi: 10.1074/mcp.O114.046565. Epub 2015 Jan 23. Review.


Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes.

Li X, Wang W, Wang J, Malovannaya A, Xi Y, Li W, Guerra R, Hawke DH, Qin J, Chen J.

Mol Syst Biol. 2015 Jan 21;11(1):775. doi: 10.15252/msb.20145504.

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