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Results: 1 to 20 of 169

1.

The types of hepatic myofibroblasts contributing to liver fibrosis of different etiologies.

Xu J, Liu X, Koyama Y, Wang P, Lan T, Kim IG, Kim IH, Ma HY, Kisseleva T.

Front Pharmacol. 2014 Jul 22;5:167. doi: 10.3389/fphar.2014.00167. eCollection 2014. Review.

PMID:
25100997
[PubMed]
Free PMC Article
2.

Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria.

Ekblom R, Smeds L, Ellegren H.

BMC Genomics. 2014 Jun 12;15:467. doi: 10.1186/1471-2164-15-467.

PMID:
24923674
[PubMed - in process]
Free PMC Article
3.

Computational approaches for isoform detection and estimation: good and bad news.

Angelini C, De Canditiis D, De Feis I.

BMC Bioinformatics. 2014 May 9;15:135. doi: 10.1186/1471-2105-15-135.

PMID:
24885830
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data.

wa Maina C, Honkela A, Matarese F, Grote K, Stunnenberg HG, Reid G, Lawrence ND, Rattray M.

PLoS Comput Biol. 2014 May 15;10(5):e1003598. doi: 10.1371/journal.pcbi.1003598. eCollection 2014 May.

PMID:
24830797
[PubMed - in process]
Free PMC Article
5.

A comparison of peak callers used for DNase-Seq data.

Koohy H, Down TA, Spivakov M, Hubbard T.

PLoS One. 2014 May 8;9(5):e96303. doi: 10.1371/journal.pone.0096303. eCollection 2014.

PMID:
24810143
[PubMed - in process]
Free PMC Article
6.

Personal genomic information management and personalized medicine: challenges, current solutions, and roles of HIM professionals.

Alzu'bi A, Zhou L, Watzlaf V.

Perspect Health Inf Manag. 2014 Apr 1;11:1c. eCollection 2014.

PMID:
24808804
[PubMed - in process]
Free PMC Article
7.

Universal count correction for high-throughput sequencing.

Hashimoto TB, Edwards MD, Gifford DK.

PLoS Comput Biol. 2014 Mar 6;10(3):e1003494. doi: 10.1371/journal.pcbi.1003494. eCollection 2014 Mar.

PMID:
24603409
[PubMed - in process]
Free PMC Article
8.

Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution.

Wang B, Ekblom R, Bunikis I, Siitari H, Höglund J.

BMC Genomics. 2014 Mar 6;15:180. doi: 10.1186/1471-2164-15-180.

PMID:
24602261
[PubMed - in process]
Free PMC Article
9.

Adaptive bandwidth kernel density estimation for next-generation sequencing data.

Ramachandran P, Perkins TJ.

BMC Proc. 2013 Dec 20;7(Suppl 7):S7. doi: 10.1186/1753-6561-7-S7-S7. Epub 2013 Dec 20.

PMID:
24564977
[PubMed]
Free PMC Article
10.

Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data.

Goi C, Little P, Xie C.

BMC Genomics. 2013;14 Suppl 5:S2. doi: 10.1186/1471-2164-14-S5-S2. Epub 2013 Oct 16.

PMID:
24564528
[PubMed - in process]
Free PMC Article
11.

An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example.

Cheng CY, Chu CH, Hsu HW, Hsu FR, Tang CY, Wang WC, Kung HJ, Chang PC.

BMC Genomics. 2014;15 Suppl 1:S1. doi: 10.1186/1471-2164-15-S1-S1. Epub 2014 Jan 24.

PMID:
24564277
[PubMed - in process]
Free PMC Article
12.

A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.

Tran NT, Huang CH.

Biol Direct. 2014 Feb 20;9:4. doi: 10.1186/1745-6150-9-4.

PMID:
24555784
[PubMed - in process]
Free PMC Article
13.

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish.

Wang R, Sun L, Bao L, Zhang J, Jiang Y, Yao J, Song L, Feng J, Liu S, Liu Z.

BMC Genomics. 2013 Dec 30;14:929. doi: 10.1186/1471-2164-14-929.

PMID:
24373586
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing.

Zhang J, Ruhlman TA, Mower JP, Jansen RK.

BMC Plant Biol. 2013 Dec 29;13:228. doi: 10.1186/1471-2229-13-228.

PMID:
24373163
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression.

Atallah J, Plachetzki DC, Jasper WC, Johnson BR.

PLoS One. 2013 Dec 16;8(12):e84160. doi: 10.1371/journal.pone.0084160. eCollection 2013.

PMID:
24358338
[PubMed - in process]
Free PMC Article
16.

Large-scale quality analysis of published ChIP-seq data.

Marinov GK, Kundaje A, Park PJ, Wold BJ.

G3 (Bethesda). 2014 Feb 19;4(2):209-23. doi: 10.1534/g3.113.008680.

PMID:
24347632
[PubMed - in process]
Free PMC Article
17.

MicroRNAs as biomarkers for CNS disease.

Rao P, Benito E, Fischer A.

Front Mol Neurosci. 2013 Nov 26;6:39. doi: 10.3389/fnmol.2013.00039. Review.

PMID:
24324397
[PubMed]
Free PMC Article
18.

Assessing computational methods for transcription factor target gene identification based on ChIP-seq data.

Sikora-Wohlfeld W, Ackermann M, Christodoulou EG, Singaravelu K, Beyer A.

PLoS Comput Biol. 2013;9(11):e1003342. doi: 10.1371/journal.pcbi.1003342. Epub 2013 Nov 21.

PMID:
24278002
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Practical guidelines for the comprehensive analysis of ChIP-seq data.

Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, Liu T, Madrigal P, Taslim C, Zhang J.

PLoS Comput Biol. 2013;9(11):e1003326. doi: 10.1371/journal.pcbi.1003326. Epub 2013 Nov 14.

PMID:
24244136
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps.

Mortazavi A, Pepke S, Jansen C, Marinov GK, Ernst J, Kellis M, Hardison RC, Myers RM, Wold BJ.

Genome Res. 2013 Dec;23(12):2136-48. doi: 10.1101/gr.158261.113. Epub 2013 Oct 29.

PMID:
24170599
[PubMed - indexed for MEDLINE]
Free PMC Article

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