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RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells.

Pandolfini L, Luzi E, Bressan D, Ucciferri N, Bertacchi M, Brandi R, Rocchiccioli S, D'Onofrio M, Cremisi F.

Genome Biol. 2016 May 6;17(1):94. doi: 10.1186/s13059-016-0952-x.


The BAF chromatin remodelling complex is an epigenetic regulator of lineage specification in the early mouse embryo.

Panamarova M, Cox A, Wicher KB, Butler R, Bulgakova N, Jeon S, Rosen B, Seong RH, Skarnes W, Crabtree G, Zernicka-Goetz M.

Development. 2016 Apr 15;143(8):1271-83. doi: 10.1242/dev.131961. Epub 2016 Mar 7.


Analysis of chromatin structure in mouse preimplantation embryos by fluorescent recovery after photobleaching.

Ooga M, Fulka H, Hashimoto S, Suzuki MG, Aoki F.

Epigenetics. 2016 Jan 2;11(1):85-94. doi: 10.1080/15592294.2015.1136774. Epub 2016 Feb 18.


Inhibition of β-catenin-TCF1 interaction delays differentiation of mouse embryonic stem cells.

Chatterjee SS, Saj A, Gocha T, Murphy M, Gonsalves FC, Zhang X, Hayward P, Akgöl Oksuz B, Shen SS, Madar A, Martinez Arias A, DasGupta R.

J Cell Biol. 2015 Oct 12;211(1):39-51. doi: 10.1083/jcb.201503017.


Regulation of Nucleosome Architecture and Factor Binding Revealed by Nuclease Footprinting of the ESC Genome.

Hainer SJ, Fazzio TG.

Cell Rep. 2015 Oct 6;13(1):61-9. doi: 10.1016/j.celrep.2015.08.071. Epub 2015 Sep 24.


Distribution Analyzer, a methodology for identifying and clustering outlier conditions from single-cell distributions, and its application to a Nanog reporter RNAi screen.

Gingold JA, Coakley ES, Su J, Lee DF, Lau Z, Zhou H, Felsenfeld DP, Schaniel C, Lemischka IR.

BMC Bioinformatics. 2015 Jul 22;16:225. doi: 10.1186/s12859-015-0636-7.


Knockdown of Brm and Baf170, Components of Chromatin Remodeling Complex, Facilitates Reprogramming of Somatic Cells.

Jiang Z, Tang Y, Zhao X, Zhang M, Donovan DM, Tian XC.

Stem Cells Dev. 2015 Oct 1;24(19):2328-36. doi: 10.1089/scd.2015.0069. Epub 2015 Jun 29.


MiRNA-Mediated Regulation of the SWI/SNF Chromatin Remodeling Complex Controls Pluripotency and Endodermal Differentiation in Human ESCs.

Wade SL, Langer LF, Ward JM, Archer TK.

Stem Cells. 2015 Oct;33(10):2925-35. doi: 10.1002/stem.2084. Epub 2015 Jul 14.


Quantitative phosphoproteome analysis of embryonic stem cell differentiation toward blood.

Piazzi M, Williamson A, Lee CF, Pearson S, Lacaud G, Kouskoff V, McCubrey JA, Cocco L, Whetton AD.

Oncotarget. 2015 May 10;6(13):10924-39.


ARID1B-mediated disorders: Mutations and possible mechanisms.

Sim JC, White SM, Lockhart PJ.

Intractable Rare Dis Res. 2015 Feb;4(1):17-23. doi: 10.5582/irdr.2014.01021. Review.


Identification of protein complexes that bind to histone H3 combinatorial modifications using super-SILAC and weighted correlation network analysis.

Kunowska N, Rotival M, Yu L, Choudhary J, Dillon N.

Nucleic Acids Res. 2015 Feb 18;43(3):1418-32. doi: 10.1093/nar/gku1350. Epub 2015 Jan 20.


DNA methylation signatures link prenatal famine exposure to growth and metabolism.

Tobi EW, Goeman JJ, Monajemi R, Gu H, Putter H, Zhang Y, Slieker RC, Stok AP, Thijssen PE, Müller F, van Zwet EW, Bock C, Meissner A, Lumey LH, Eline Slagboom P, Heijmans BT.

Nat Commun. 2014 Nov 26;5:5592. doi: 10.1038/ncomms6592. Erratum in: Nat Commun. 2015;6:7740.


Genetic, epigenetic, and environmental contributions to neural tube closure.

Wilde JJ, Petersen JR, Niswander L.

Annu Rev Genet. 2014;48:583-611. doi: 10.1146/annurev-genet-120213-092208. Epub 2014 Oct 6. Review.


Control of embryonic stem cell identity by BRD4-dependent transcriptional elongation of super-enhancer-associated pluripotency genes.

Di Micco R, Fontanals-Cirera B, Low V, Ntziachristos P, Yuen SK, Lovell CD, Dolgalev I, Yonekubo Y, Zhang G, Rusinova E, Gerona-Navarro G, Cañamero M, Ohlmeyer M, Aifantis I, Zhou MM, Tsirigos A, Hernando E.

Cell Rep. 2014 Oct 9;9(1):234-47. doi: 10.1016/j.celrep.2014.08.055. Epub 2014 Sep 26.


Transcriptional repression by the BRG1-SWI/SNF complex affects the pluripotency of human embryonic stem cells.

Zhang X, Li B, Li W, Ma L, Zheng D, Li L, Yang W, Chu M, Chen W, Mailman RB, Zhu J, Fan G, Archer TK, Wang Y.

Stem Cell Reports. 2014 Sep 9;3(3):460-74. doi: 10.1016/j.stemcr.2014.07.004. Epub 2014 Aug 14.


A genome-wide RNAi screen identifies opposing functions of Snai1 and Snai2 on the Nanog dependency in reprogramming.

Gingold JA, Fidalgo M, Guallar D, Lau Z, Sun Z, Zhou H, Faiola F, Huang X, Lee DF, Waghray A, Schaniel C, Felsenfeld DP, Lemischka IR, Wang J.

Mol Cell. 2014 Oct 2;56(1):140-52. doi: 10.1016/j.molcel.2014.08.014. Epub 2014 Sep 15.


Histone content increases in differentiating embryonic stem cells.

Karnavas T, Pintonello L, Agresti A, Bianchi ME.

Front Physiol. 2014 Aug 28;5:330. doi: 10.3389/fphys.2014.00330. eCollection 2014.


INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development.

Wang L, Du Y, Ward JM, Shimbo T, Lackford B, Zheng X, Miao YL, Zhou B, Han L, Fargo DC, Jothi R, Williams CJ, Wade PA, Hu G.

Cell Stem Cell. 2014 May 1;14(5):575-91. doi: 10.1016/j.stem.2014.02.013.


Mammalian cells contain two functionally distinct PBAF complexes incorporating different isoforms of PHF10 signature subunit.

Brechalov AV, Georgieva SG, Soshnikova NV.

Cell Cycle. 2014;13(12):1970-9. doi: 10.4161/cc.28922. Epub 2014 Apr 24.


Epigenetic regulation of open chromatin in pluripotent stem cells.

Kobayashi H, Kikyo N.

Transl Res. 2015 Jan;165(1):18-27. doi: 10.1016/j.trsl.2014.03.004. Epub 2014 Mar 13. Review.

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