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Items: 1 to 20 of 37


Sequence Factorization with Multiple References.

Wandelt S, Leser U.

PLoS One. 2015 Sep 30;10(9):e0139000. doi: 10.1371/journal.pone.0139000. eCollection 2015.


Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.

Andrés F, Romera-Branchat M, Martínez-Gallegos R, Patel V, Schneeberger K, Jang S, Altmüller J, Nürnberg P, Coupland G.

Plant Physiol. 2015 Nov;169(3):2187-99. doi: 10.1104/pp.15.00960. Epub 2015 Sep 28.


Improved genome inference in the MHC using a population reference graph.

Dilthey A, Cox C, Iqbal Z, Nelson MR, McVean G.

Nat Genet. 2015 Jun;47(6):682-8. doi: 10.1038/ng.3257. Epub 2015 Apr 27.


Searching and Indexing Genomic Databases via Kernelization.

Gagie T, Puglisi SJ.

Front Bioeng Biotechnol. 2015 Feb 9;3:12. doi: 10.3389/fbioe.2015.00012. eCollection 2015. Review.


Evidence that mutation accumulation does not cause aging in Saccharomyces cerevisiae.

Kaya A, Lobanov AV, Gladyshev VN.

Aging Cell. 2015 Jun;14(3):366-71. doi: 10.1111/acel.12290. Epub 2015 Feb 22.


FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.

Kolb C, Nagel MK, Kalinowska K, Hagmann J, Ichikawa M, Anzenberger F, Alkofer A, Sato MH, Braun P, Isono E.

Plant Physiol. 2015 Apr;167(4):1361-73. doi: 10.1104/pp.114.253377. Epub 2015 Feb 19.


Rapid and inexpensive whole-genome genotyping-by-sequencing for crossover localization and fine-scale genetic mapping.

Rowan BA, Patel V, Weigel D, Schneeberger K.

G3 (Bethesda). 2015 Jan 13;5(3):385-98. doi: 10.1534/g3.114.016501.


Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage.

Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D.

PLoS Genet. 2015 Jan 8;11(1):e1004920. doi: 10.1371/journal.pgen.1004920. eCollection 2015 Jan.


Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality.

Shen X, De Jonge J, Forsberg SK, Pettersson ME, Sheng Z, Hennig L, Carlborg Ö.

PLoS Genet. 2014 Dec 11;10(12):e1004842. doi: 10.1371/journal.pgen.1004842. eCollection 2014 Dec.


Indexes of large genome collections on a PC.

Danek A, Deorowicz S, Grabowski S.

PLoS One. 2014 Oct 7;9(10):e109384. doi: 10.1371/journal.pone.0109384. eCollection 2014. Erratum in: PLoS One. 2015;10(5):e0128172.


Rapid identification of a natural knockout allele of ARMADILLO REPEAT-CONTAINING KINESIN1 that causes root hair branching by mapping-by-sequencing.

Rishmawi L, Sun H, Schneeberger K, Hülskamp M, Schrader A.

Plant Physiol. 2014 Nov;166(3):1280-7. doi: 10.1104/pp.114.244046. Epub 2014 Sep 23.


Thiol peroxidase deficiency leads to increased mutational load and decreased fitness in Saccharomyces cerevisiae.

Kaya A, Lobanov AV, Gerashchenko MV, Koren A, Fomenko DE, Koc A, Gladyshev VN.

Genetics. 2014 Nov;198(3):905-17. doi: 10.1534/genetics.114.169243. Epub 2014 Aug 29.


Evaluation and comparison of multiple aligners for next-generation sequencing data analysis.

Shang J, Zhu F, Vongsangnak W, Tang Y, Zhang W, Shen B.

Biomed Res Int. 2014;2014:309650. doi: 10.1155/2014/309650. Epub 2014 Mar 23.


The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana.

Wijnker E, Velikkakam James G, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, de Jong DF, de Snoo CB, Zapata L, Huettel B, de Jong H, Ossowski S, Weigel D, Koornneef M, Keurentjes JJ, Schneeberger K.

Elife. 2013 Dec 17;2:e01426. doi: 10.7554/eLife.01426.


Facile mutant identification via a single parental backcross method and application of whole genome sequencing based mapping pipelines.

Allen RS, Nakasugi K, Doran RL, Millar AA, Waterhouse PM.

Front Plant Sci. 2013 Sep 13;4:362. doi: 10.3389/fpls.2013.00362. eCollection 2013.


Short read alignment with populations of genomes.

Huang L, Popic V, Batzoglou S.

Bioinformatics. 2013 Jul 1;29(13):i361-70. doi: 10.1093/bioinformatics/btt215.


Accurate indel prediction using paired-end short reads.

Grimm D, Hagmann J, Koenig D, Weigel D, Borgwardt K.

BMC Genomics. 2013 Feb 27;14:132. doi: 10.1186/1471-2164-14-132.


High Performance Multiple Sequence Alignment System for Pyrosequencing Reads from Multiple Reference Genomes.

Saeed F, Perez-Rathke A, Gwarnicki J, Berger-Wolf T, Khokhar A.

J Parallel Distrib Comput. 2012 Jan;72(1):83-93. Epub 2011 Sep 16.


Fast isogenic mapping-by-sequencing of ethyl methanesulfonate-induced mutant bulks.

Hartwig B, James GV, Konrad K, Schneeberger K, Turck F.

Plant Physiol. 2012 Oct;160(2):591-600. doi: 10.1104/pp.112.200311. Epub 2012 Jul 26.


A de Bruijn graph approach to the quantification of closely-related genomes in a microbial community.

Wang M, Ye Y, Tang H.

J Comput Biol. 2012 Jun;19(6):814-25. doi: 10.1089/cmb.2012.0058.

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