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Results: 1 to 20 of 68

1.

Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile.

Lakshmanan M, Mohanty B, Lim SH, Ha SH, Lee DY.

AoB Plants. 2014 Jun 3;6. pii: plu026. doi: 10.1093/aobpla/plu026.

PMID:
24894389
[PubMed]
Free PMC Article
2.

Genome-scale metabolic network reconstruction and in silico flux analysis of the thermophilic bacterium Thermus thermophilus HB27.

Lee NR, Lakshmanan M, Aggarwal S, Song JW, Karimi IA, Lee DY, Park JB.

Microb Cell Fact. 2014 Apr 28;13:61. doi: 10.1186/1475-2859-13-61.

PMID:
24774833
[PubMed - indexed for MEDLINE]
Free PMC Article
3.
4.

Analyzing clonal variation of monoclonal antibody-producing CHO cell lines using an in silico metabolomic platform.

Ghorbaniaghdam A, Chen J, Henry O, Jolicoeur M.

PLoS One. 2014 Mar 14;9(3):e90832. doi: 10.1371/journal.pone.0090832. eCollection 2014.

PMID:
24632968
[PubMed - in process]
Free PMC Article
5.

Genetic basis of metabolome variation in yeast.

Breunig JS, Hackett SR, Rabinowitz JD, Kruglyak L.

PLoS Genet. 2014 Mar 6;10(3):e1004142. doi: 10.1371/journal.pgen.1004142. eCollection 2014 Mar.

PMID:
24603560
[PubMed - in process]
Free PMC Article
6.

Genome-scale NAD(H/(+)) availability patterns as a differentiating feature between Saccharomyces cerevisiae and Scheffersomyces stipitis in relation to fermentative metabolism.

Acevedo A, Aroca G, Conejeros R.

PLoS One. 2014 Jan 29;9(1):e87494. doi: 10.1371/journal.pone.0087494. eCollection 2014.

PMID:
24489927
[PubMed - in process]
Free PMC Article
7.

Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance.

Thomas A, Rahmanian S, Bordbar A, Palsson BØ, Jamshidi N.

Sci Rep. 2014 Jan 29;4:3925. doi: 10.1038/srep03925.

PMID:
24473230
[PubMed - in process]
Free PMC Article
8.

Metabolic constraint-based refinement of transcriptional regulatory networks.

Chandrasekaran S, Price ND.

PLoS Comput Biol. 2013;9(12):e1003370. doi: 10.1371/journal.pcbi.1003370. Epub 2013 Dec 5.

PMID:
24348226
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sybil--efficient constraint-based modelling in R.

Gelius-Dietrich G, Desouki AA, Fritzemeier CJ, Lercher MJ.

BMC Syst Biol. 2013 Nov 13;7:125. doi: 10.1186/1752-0509-7-125.

PMID:
24224957
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious.

Wagner A, Zarecki R, Reshef L, Gochev C, Sorek R, Gophna U, Ruppin E.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):19166-71. doi: 10.1073/pnas.1312361110. Epub 2013 Nov 6.

PMID:
24198337
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools.

Reznik E, Mehta P, Segrè D.

PLoS Comput Biol. 2013;9(8):e1003195. doi: 10.1371/journal.pcbi.1003195. Epub 2013 Aug 29.

PMID:
24009492
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Exploration and comparison of inborn capacity of aerobic and anaerobic metabolisms of Saccharomyces cerevisiae for microbial electrical current production.

Mao L, Verwoerd WS.

Bioengineered. 2013 Nov-Dec;4(6):420-30. doi: 10.4161/bioe.26222. Epub 2013 Aug 21.

PMID:
23969939
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.

Heavner BD, Smallbone K, Price ND, Walker LP.

Database (Oxford). 2013 Aug 9;2013:bat059. doi: 10.1093/database/bat059. Print 2013.

PMID:
23935056
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Metabolic analyses elucidate non-trivial gene targets for amplifying dihydroartemisinic acid production in yeast.

Misra A, Conway MF, Johnnie J, Qureshi TM, Lige B, Derrick AM, Agbo EC, Sriram G.

Front Microbiol. 2013 Jul 26;4:200. doi: 10.3389/fmicb.2013.00200. eCollection 2013.

PMID:
23898325
[PubMed]
Free PMC Article
15.

An analysis of a 'community-driven' reconstruction of the human metabolic network.

Swainston N, Mendes P, Kell DB.

Metabolomics. 2013 Aug;9(4):757-764. Epub 2013 Jul 12.

PMID:
23888127
[PubMed]
Free PMC Article
16.

Characterization of the metabolic requirements in yeast meiosis.

Ray D, Ye P.

PLoS One. 2013 May 8;8(5):e63707. doi: 10.1371/journal.pone.0063707. Print 2013.

PMID:
23675502
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling.

Österlund T, Nookaew I, Bordel S, Nielsen J.

BMC Syst Biol. 2013 Apr 30;7:36. doi: 10.1186/1752-0509-7-36.

PMID:
23631471
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Inferring metabolic states in uncharacterized environments using gene-expression measurements.

Rossell S, Huynen MA, Notebaart RA.

PLoS Comput Biol. 2013;9(3):e1002988. doi: 10.1371/journal.pcbi.1002988. Epub 2013 Mar 21.

PMID:
23555222
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dynamic metabolic modeling of a microaerobic yeast co-culture: predicting and optimizing ethanol production from glucose/xylose mixtures.

Hanly TJ, Henson MA.

Biotechnol Biofuels. 2013 Apr 1;6(1):44. doi: 10.1186/1754-6834-6-44.

PMID:
23548183
[PubMed]
Free PMC Article
20.

Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism.

Shahzad K, Loor JJ.

Curr Genomics. 2012 Aug;13(5):379-94. doi: 10.2174/138920212801619269.

PMID:
23372424
[PubMed]
Free PMC Article

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