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Items: 19

1.

Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms.

Justice NB, Norman A, Brown CT, Singh A, Thomas BC, Banfield JF.

BMC Genomics. 2014 Dec 15;15:1107. doi: 10.1186/1471-2164-15-1107.

2.

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens.

Dalla Vecchia E, Shao PP, Suvorova E, Chiappe D, Hamelin R, Bernier-Latmani R.

Front Microbiol. 2014 Aug 19;5:432. doi: 10.3389/fmicb.2014.00432. eCollection 2014.

3.

Acetone utilization by sulfate-reducing bacteria: draft genome sequence of Desulfococcus biacutus and a proteomic survey of acetone-inducible proteins.

Gutiérrez Acosta OB, Schleheck D, Schink B.

BMC Genomics. 2014 Jul 11;15:584. doi: 10.1186/1471-2164-15-584.

4.

Recognition of Protein-coding Genes Based on Z-curve Algorithms.

-Biao Guo F, Lin Y, -Ling Chen L.

Curr Genomics. 2014 Apr;15(2):95-103. doi: 10.2174/1389202915999140328162724.

5.

A Brief Review: The Z-curve Theory and its Application in Genome Analysis.

Zhang R, Zhang CT.

Curr Genomics. 2014 Apr;15(2):78-94. doi: 10.2174/1389202915999140328162433.

6.

Origin and evolution of the sodium -pumping NADH: ubiquinone oxidoreductase.

Reyes-Prieto A, Barquera B, Juárez O.

PLoS One. 2014 May 8;9(5):e96696. doi: 10.1371/journal.pone.0096696. eCollection 2014.

7.

Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin.

Kaster AK, Mayer-Blackwell K, Pasarelli B, Spormann AM.

ISME J. 2014 Sep;8(9):1831-42. doi: 10.1038/ismej.2014.24. Epub 2014 Mar 6.

8.

Deciphering unusual uncultured magnetotactic multicellular prokaryotes through genomics.

Abreu F, Morillo V, Nascimento FF, Werneck C, Cantão ME, Ciapina LP, de Almeida LG, Lefèvre CT, Bazylinski DA, de Vasconcelos AT, Lins U.

ISME J. 2014 May;8(5):1055-68. doi: 10.1038/ismej.2013.203. Epub 2013 Nov 7.

9.

Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy.

Schunck H, Lavik G, Desai DK, Großkopf T, Kalvelage T, Löscher CR, Paulmier A, Contreras S, Siegel H, Holtappels M, Rosenstiel P, Schilhabel MB, Graco M, Schmitz RA, Kuypers MM, Laroche J.

PLoS One. 2013 Aug 21;8(8):e68661. doi: 10.1371/journal.pone.0068661. eCollection 2013.

10.

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi.

Wasmund K, Schreiber L, Lloyd KG, Petersen DG, Schramm A, Stepanauskas R, Jørgensen BB, Adrian L.

ISME J. 2014 Feb;8(2):383-97. doi: 10.1038/ismej.2013.143. Epub 2013 Aug 22.

11.

Early bioenergetic evolution.

Sousa FL, Thiergart T, Landan G, Nelson-Sathi S, Pereira IA, Allen JF, Lane N, Martin WF.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 10;368(1622):20130088. doi: 10.1098/rstb.2013.0088. Print 2013 Jul 19. Review.

12.

The Rnf complex of Clostridium ljungdahlii is a proton-translocating ferredoxin:NAD+ oxidoreductase essential for autotrophic growth.

Tremblay PL, Zhang T, Dar SA, Leang C, Lovley DR.

MBio. 2012 Dec 26;4(1):e00406-12. doi: 10.1128/mBio.00406-12.

13.

Genetic analysis of the upper phenylacetate catabolic pathway in the production of tropodithietic acid by Phaeobacter gallaeciensis.

Berger M, Brock NL, Liesegang H, Dogs M, Preuth I, Simon M, Dickschat JS, Brinkhoff T.

Appl Environ Microbiol. 2012 May;78(10):3539-51. doi: 10.1128/AEM.07657-11. Epub 2012 Mar 9.

14.

The sulfate-rich and extreme saline sediment of the ephemeral tirez lagoon: a biotope for acetoclastic sulfate-reducing bacteria and hydrogenotrophic methanogenic archaea.

Montoya L, Lozada-Chávez I, Amils R, Rodriguez N, Marín I.

Int J Microbiol. 2011;2011:753758. doi: 10.1155/2011/753758. Epub 2011 Sep 11.

15.

A comparative genomic analysis of energy metabolism in sulfate reducing bacteria and archaea.

Pereira IA, Ramos AR, Grein F, Marques MC, da Silva SM, Venceslau SS.

Front Microbiol. 2011 Apr 19;2:69. doi: 10.3389/fmicb.2011.00069. eCollection 2011.

16.

More than 200 genes required for methane formation from H₂ and CO₂ and energy conservation are present in Methanothermobacter marburgensis and Methanothermobacter thermautotrophicus.

Kaster AK, Goenrich M, Seedorf H, Liesegang H, Wollherr A, Gottschalk G, Thauer RK.

Archaea. 2011;2011:973848. doi: 10.1155/2011/973848. Epub 2011 Apr 27.

17.

Complete genome sequence of Desulfarculus baarsii type strain (2st14).

Sun H, Spring S, Lapidus A, Davenport K, Del Rio TG, Tice H, Nolan M, Copeland A, Cheng JF, Lucas S, Tapia R, Goodwin L, Pitluck S, Ivanova N, Pagani I, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Detter JC, Han C, Rohde M, Brambilla E, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M.

Stand Genomic Sci. 2010 Nov 20;3(3):276-84. doi: 10.4056/sigs.1243258.

18.

Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575).

Spring S, Lapidus A, Schröder M, Gleim D, Sims D, Meincke L, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Brettin T, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Han C.

Stand Genomic Sci. 2009 Nov 22;1(3):242-53. doi: 10.4056/sigs.39508.

19.

Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea.

Kaster AK, Moll J, Parey K, Thauer RK.

Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2981-6. doi: 10.1073/pnas.1016761108. Epub 2011 Jan 24.

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