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Results: 1 to 20 of 24

1.

A web-based protein interaction network visualizer.

Salazar GA, Meintjes A, Mazandu GK, Rapanoël HA, Akinola RO, Mulder NJ.

BMC Bioinformatics. 2014 May 6;15:129. doi: 10.1186/1471-2105-15-129.

PMID:
24885165
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Computational tools for the secondary analysis of metabolomics experiments.

Booth SC, Weljie AM, Turner RJ.

Comput Struct Biotechnol J. 2013 Feb 6;4:e201301003. doi: 10.5936/csbj.201301003. eCollection 2013. Review.

PMID:
24688685
[PubMed]
Free PMC Article
3.

Interactive exploration of integrated biological datasets using context-sensitive workflows.

Horn F, Rittweger M, Taubert J, Lysenko A, Rawlings C, Guthke R.

Front Genet. 2014 Feb 20;5:21. doi: 10.3389/fgene.2014.00021. eCollection 2014.

PMID:
24600467
[PubMed]
Free PMC Article
4.

BiNA: a visual analytics tool for biological network data.

Gerasch A, Faber D, Küntzer J, Niermann P, Kohlbacher O, Lenhof HP, Kaufmann M.

PLoS One. 2014 Feb 13;9(2):e87397. doi: 10.1371/journal.pone.0087397. eCollection 2014.

PMID:
24551056
[PubMed - in process]
Free PMC Article
5.

Unraveling genomic variation from next generation sequencing data.

Pavlopoulos GA, Oulas A, Iacucci E, Sifrim A, Moreau Y, Schneider R, Aerts J, Iliopoulos I.

BioData Min. 2013 Jul 25;6(1):13. doi: 10.1186/1756-0381-6-13.

PMID:
23885890
[PubMed]
Free PMC Article
6.

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.

Moulos P, Klein J, Jupp S, Stevens R, Bascands JL, Schanstra JP.

BMC Bioinformatics. 2013 Jul 24;14:235. doi: 10.1186/1471-2105-14-235.

PMID:
23883183
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Csermely P, Korcsmáros T, Kiss HJ, London G, Nussinov R.

Pharmacol Ther. 2013 Jun;138(3):333-408. doi: 10.1016/j.pharmthera.2013.01.016. Epub 2013 Feb 4. Review.

PMID:
23384594
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Visualization of protein interaction networks: problems and solutions.

Agapito G, Guzzi PH, Cannataro M.

BMC Bioinformatics. 2013;14 Suppl 1:S1. doi: 10.1186/1471-2105-14-S1-S1. Epub 2013 Jan 14.

PMID:
23368786
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Reverse engineering: a key component of systems biology to unravel global abiotic stress cross-talk.

Friedel S, Usadel B, von Wirén N, Sreenivasulu N.

Front Plant Sci. 2012 Dec 31;3:294. doi: 10.3389/fpls.2012.00294. eCollection 2012.

PMID:
23293646
[PubMed]
Free PMC Article
10.

Broadening instructional scope with network visualization.

Brandenburg MD, Song J.

J Med Libr Assoc. 2012 Oct;100(4):313-6. doi: 10.3163/1536-5050.100.4.016. No abstract available.

PMID:
23133334
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

GPU-FS-kNN: a software tool for fast and scalable kNN computation using GPUs.

Arefin AS, Riveros C, Berretta R, Moscato P.

PLoS One. 2012;7(8):e44000. doi: 10.1371/journal.pone.0044000. Epub 2012 Aug 28.

PMID:
22937144
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Enabling dynamic network analysis through visualization in TVNViewer.

Curtis RE, Xiang J, Parikh A, Kinnaird P, Xing EP.

BMC Bioinformatics. 2012 Aug 16;13:204.

PMID:
22897913
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A multilevel layout algorithm for visualizing physical and genetic interaction networks, with emphasis on their modular organization.

Tuikkala J, Vähämaa H, Salmela P, Nevalainen OS, Aittokallio T.

BioData Min. 2012 Mar 26;5:2. doi: 10.1186/1756-0381-5-2.

PMID:
22448851
[PubMed]
Free PMC Article
14.

Modeling formalisms in Systems Biology.

Machado D, Costa RS, Rocha M, Ferreira EC, Tidor B, Rocha I.

AMB Express. 2011 Dec 5;1:45. doi: 10.1186/2191-0855-1-45.

PMID:
22141422
[PubMed]
Free PMC Article
15.

Medusa: A tool for exploring and clustering biological networks.

Pavlopoulos GA, Hooper SD, Sifrim A, Schneider R, Aerts J.

BMC Res Notes. 2011 Oct 6;4:384. doi: 10.1186/1756-0500-4-384.

PMID:
21978489
[PubMed]
Free PMC Article
16.

Extending biochemical databases by metabolomic surveys.

Fiehn O, Barupal DK, Kind T.

J Biol Chem. 2011 Jul 8;286(27):23637-43. doi: 10.1074/jbc.R110.173617. Epub 2011 May 12. Review. Erratum in: J Biol Chem. 2011 Aug 26;286(34):30244.

PMID:
21566124
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

TVNViewer: an interactive visualization tool for exploring networks that change over time or space.

Curtis RE, Yuen A, Song L, Goyal A, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):1880-1. doi: 10.1093/bioinformatics/btr273. Epub 2011 May 5.

PMID:
21551142
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Using graph theory to analyze biological networks.

Pavlopoulos GA, Secrier M, Moschopoulos CN, Soldatos TG, Kossida S, Aerts J, Schneider R, Bagos PG.

BioData Min. 2011 Apr 28;4:10. doi: 10.1186/1756-0381-4-10.

PMID:
21527005
[PubMed]
Free PMC Article
19.

FragViz: visualization of fragmented networks.

Stajdohar M, Mramor M, Zupan B, Demšar J.

BMC Bioinformatics. 2010 Sep 22;11:475. doi: 10.1186/1471-2105-11-475.

PMID:
20860802
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Managing Chaos: Lessons Learned Developing Software in the Life Sciences.

Killcoyne S, Boyle J.

Comput Sci Eng. 2009 Nov;11(6):20-29. No abstract available.

PMID:
20700479
[PubMed]
Free PMC Article

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