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Cited In for PubMed (Select 19020620)


Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth.

Palkopoulou E, Mallick S, Skoglund P, Enk J, Rohland N, Li H, Omrak A, Vartanyan S, Poinar H, Götherström A, Reich D, Dalén L.

Curr Biol. 2015 May 18;25(10):1395-400. doi: 10.1016/j.cub.2015.04.007. Epub 2015 Apr 23.


Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids.

Der Sarkissian C, Vilstrup JT, Schubert M, Seguin-Orlando A, Eme D, Weinstock J, Alberdi MT, Martin F, Lopez PM, Prado JL, Prieto A, Douady CJ, Stafford TW, Willerslev E, Orlando L.

Biol Lett. 2015 Mar;11(3). pii: 20141058. doi: 10.1098/rsbl.2014.1058.


Impacts of low coverage depths and post-mortem DNA damage on variant calling: a simulation study.

Parks M, Lambert D.

BMC Genomics. 2015 Jan 23;16:19. doi: 10.1186/s12864-015-1219-8.


A field guide to whole-genome sequencing, assembly and annotation.

Ekblom R, Wolf JB.

Evol Appl. 2014 Nov;7(9):1026-42. doi: 10.1111/eva.12178. Epub 2014 Jun 24. Review.


Ancient genomics.

Der Sarkissian C, Allentoft ME, Ávila-Arcos MC, Barnett R, Campos PF, Cappellini E, Ermini L, Fernández R, da Fonseca R, Ginolhac A, Hansen AJ, Jónsson H, Korneliussen T, Margaryan A, Martin MD, Moreno-Mayar JV, Raghavan M, Rasmussen M, Velasco MS, Schroeder H, Schubert M, Seguin-Orlando A, Wales N, Gilbert MT, Willerslev E, Orlando L.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130387. doi: 10.1098/rstb.2013.0387.


Ancient population genomics and the study of evolution.

Parks M, Subramanian S, Baroni C, Salvatore MC, Zhang G, Millar CD, Lambert DM.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130381. doi: 10.1098/rstb.2013.0381.


SNPest: a probabilistic graphical model for estimating genotypes.

Lindgreen S, Krogh A, Pedersen JS.

BMC Res Notes. 2014 Oct 7;7:698. doi: 10.1186/1756-0500-7-698.


Adaptable probabilistic mapping of short reads using position specific scoring matrices.

Kerpedjiev P, Frellsen J, Lindgreen S, Krogh A.

BMC Bioinformatics. 2014 Apr 9;15:100. doi: 10.1186/1471-2105-15-100.


Extraordinary incidence of cervical ribs indicates vulnerable condition in Late Pleistocene mammoths.

Reumer JW, Ten Broek CM, Galis F.

PeerJ. 2014 Mar 25;2:e318. doi: 10.7717/peerj.318. eCollection 2014.


Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data.

Ghosh D, Qin ZS.

Genes (Basel). 2010 Sep 27;1(2):317-34. doi: 10.3390/genes1020317.


Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives.

Knapp M, Hofreiter M.

Genes (Basel). 2010 Jul 28;1(2):227-43. doi: 10.3390/genes1020227.


DNA fingerprinting in zoology: past, present, future.

Chambers GK, Curtis C, Millar CD, Huynen L, Lambert DM.

Investig Genet. 2014 Feb 3;5(1):3. doi: 10.1186/2041-2223-5-3.


A universal method for species identification of mammals utilizing next generation sequencing for the analysis of DNA mixtures.

Tillmar AO, Dell'Amico B, Welander J, Holmlund G.

PLoS One. 2013 Dec 16;8(12):e83761. doi: 10.1371/journal.pone.0083761. eCollection 2013.


Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.

Pedersen JS, Valen E, Velazquez AM, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MT, Krogh A, Willerslev E, Orlando L.

Genome Res. 2014 Mar;24(3):454-66. doi: 10.1101/gr.163592.113. Epub 2013 Dec 3.


Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes.

Seguin-Orlando A, Schubert M, Clary J, Stagegaard J, Alberdi MT, Prado JL, Prieto A, Willerslev E, Orlando L.

PLoS One. 2013 Oct 29;8(10):e78575. doi: 10.1371/journal.pone.0078575. eCollection 2013.


Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

Dabney J, Knapp M, Glocke I, Gansauge MT, Weihmann A, Nickel B, Valdiosera C, García N, Pääbo S, Arsuaga JL, Meyer M.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15758-63. doi: 10.1073/pnas.1314445110. Epub 2013 Sep 9.


The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine.

Yoshida K, Schuenemann VJ, Cano LM, Pais M, Mishra B, Sharma R, Lanz C, Martin FN, Kamoun S, Krause J, Thines M, Weigel D, Burbano HA.

Elife. 2013 May 28;2:e00731. doi: 10.7554/eLife.00731. Erratum in: Elife. 2013;2:e01108.


No ancient DNA damage in Actinobacteria from the Neanderthal bone.

Zaremba-Niedźwiedzka K, Andersson SG.

PLoS One. 2013 May 3;8(5):e62799. doi: 10.1371/journal.pone.0062799. Print 2013.


Synthetic DNA: the next generation of big data storage.

O' Driscoll A, Sleator RD.

Bioengineered. 2013 May-Jun;4(3):123-5. doi: 10.4161/bioe.24296. Epub 2013 Mar 20.


The de novo assembly of mitochondrial genomes of the extinct passenger pigeon (Ectopistes migratorius) with next generation sequencing.

Hung CM, Lin RC, Chu JH, Yeh CF, Yao CJ, Li SH.

PLoS One. 2013;8(2):e56301. doi: 10.1371/journal.pone.0056301. Epub 2013 Feb 20.

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