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Results: 1 to 20 of 28

1.

Genome duplication and gene loss affect the evolution of heat shock transcription factor genes in legumes.

Lin Y, Cheng Y, Jin J, Jin X, Jiang H, Yan H, Cheng B.

PLoS One. 2014 Jul 21;9(7):e102825. doi: 10.1371/journal.pone.0102825. eCollection 2014.

PMID:
25047803
[PubMed - in process]
Free PMC Article
2.

Comparative mapping of the wild perennial Glycine latifolia and soybean (G. max) reveals extensive chromosome rearrangements in the genus Glycine.

Chang S, Thurber CS, Brown PJ, Hartman GL, Lambert KN, Domier LL.

PLoS One. 2014 Jun 17;9(6):e99427. doi: 10.1371/journal.pone.0099427. eCollection 2014.

PMID:
24937645
[PubMed - in process]
Free PMC Article
3.

Mining transcriptomic data to study the origins and evolution of a plant allopolyploid complex.

Bombarely A, Coate JE, Doyle JJ.

PeerJ. 2014 May 20;2:e391. doi: 10.7717/peerj.391. eCollection 2014.

PMID:
24883252
[PubMed]
Free PMC Article
4.

The Subtelomeric khipu Satellite Repeat from Phaseolus vulgaris: Lessons Learned from the Genome Analysis of the Andean Genotype G19833.

Richard MM, Chen NW, Thareau V, Pflieger S, Blanchet S, Pedrosa-Harand A, Iwata A, Chavarro C, Jackson SA, Geffroy V.

Front Plant Sci. 2013 Oct 16;4:109. doi: 10.3389/fpls.2013.00109. eCollection 2013.

PMID:
24137164
[PubMed]
Free PMC Article
5.

Evolution and Conservation of Plant NLR Functions.

Jacob F, Vernaldi S, Maekawa T.

Front Immunol. 2013 Sep 25;4:297. doi: 10.3389/fimmu.2013.00297. Review.

PMID:
24093022
[PubMed]
Free PMC Article
6.

Removing PCR for the elimination of undesired DNA fragments cycle by cycle.

Huan J, Wan K, Liu Y, Dong W, Wang G.

Sci Rep. 2013;3:2303. doi: 10.1038/srep02303.

PMID:
23892515
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A six nuclear gene phylogeny of Citrus (Rutaceae) taking into account hybridization and lineage sorting.

Ramadugu C, Pfeil BE, Keremane ML, Lee RF, Maureira-Butler IJ, Roose ML.

PLoS One. 2013 Jul 16;8(7):e68410. doi: 10.1371/journal.pone.0068410. Print 2013.

PMID:
23874615
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR.

Genome Res. 2013 Oct;23(10):1663-74. doi: 10.1101/gr.152538.112. Epub 2013 Jun 5.

PMID:
23739894
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transgressive physiological and transcriptomic responses to light stress in allopolyploid Glycine dolichocarpa (Leguminosae).

Coate JE, Powell AF, Owens TG, Doyle JJ.

Heredity (Edinb). 2013 Feb;110(2):160-70. doi: 10.1038/hdy.2012.77. Epub 2012 Nov 14.

PMID:
23149457
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evolutionary and comparative analyses of the soybean genome.

Cannon SB, Shoemaker RC.

Breed Sci. 2012 Jan;61(5):437-44. doi: 10.1270/jsbbs.61.437. Epub 2012 Feb 4.

PMID:
23136483
[PubMed]
Free PMC Article
11.

Molecular tools for exploring polyploid genomes in plants.

Aversano R, Ercolano MR, Caruso I, Fasano C, Rosellini D, Carputo D.

Int J Mol Sci. 2012;13(8):10316-35. doi: 10.3390/ijms130810316. Epub 2012 Aug 17.

PMID:
22949863
[PubMed]
Free PMC Article
12.

Structural variants in the soybean genome localize to clusters of biotic stress-response genes.

McHale LK, Haun WJ, Xu WW, Bhaskar PB, Anderson JE, Hyten DL, Gerhardt DJ, Jeddeloh JA, Stupar RM.

Plant Physiol. 2012 Aug;159(4):1295-308. doi: 10.1104/pp.112.194605. Epub 2012 Jun 13.

PMID:
22696021
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The poplar-poplar rust interaction: insights from genomics and transcriptomics.

Hacquard S, Petre B, Frey P, Hecker A, Rouhier N, Duplessis S.

J Pathog. 2011;2011:716041. doi: 10.4061/2011/716041. Epub 2011 Oct 26.

PMID:
22567338
[PubMed]
Free PMC Article
14.

Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine.

Ashfield T, Egan AN, Pfeil BE, Chen NW, Podicheti R, Ratnaparkhe MB, Ameline-Torregrosa C, Denny R, Cannon S, Doyle JJ, Geffroy V, Roe BA, Saghai Maroof MA, Young ND, Innes RW.

Plant Physiol. 2012 May;159(1):336-54. doi: 10.1104/pp.112.195040. Epub 2012 Mar 28.

PMID:
22457424
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Chromosome visualization tool: a whole genome viewer.

Cannon EK, Cannon SB.

Int J Plant Genomics. 2011;2011:373875. doi: 10.1155/2011/373875. Epub 2011 Dec 19.

PMID:
22220167
[PubMed]
Free PMC Article
16.

The more the better? The role of polyploidy in facilitating plant invasions.

te Beest M, Le Roux JJ, Richardson DM, Brysting AK, Suda J, Kubesová M, Pysek P.

Ann Bot. 2012 Jan;109(1):19-45. doi: 10.1093/aob/mcr277. Epub 2011 Oct 31. Review.

PMID:
22040744
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Organization and molecular evolution of a disease-resistance gene cluster in coffee trees.

Ribas AF, Cenci A, Combes MC, Etienne H, Lashermes P.

BMC Genomics. 2011 May 16;12:240. doi: 10.1186/1471-2164-12-240.

PMID:
21575174
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).

Varshney RK, Penmetsa RV, Dutta S, Kulwal PL, Saxena RK, Datta S, Sharma TR, Rosen B, Carrasquilla-Garcia N, Farmer AD, Dubey A, Saxena KB, Gao J, Fakrudin B, Singh MN, Singh BP, Wanjari KB, Yuan M, Srivastava RK, Kilian A, Upadhyaya HD, Mallikarjuna N, Town CD, Bruening GE, He G, May GD, McCombie R, Jackson SA, Singh NK, Cook DR.

Mol Breed. 2010 Oct;26(3):393-408. Epub 2009 Sep 17.

PMID:
20976284
[PubMed]
Free PMC Article
19.

Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris.

Lin JY, Stupar RM, Hans C, Hyten DL, Jackson SA.

Plant Cell. 2010 Aug;22(8):2545-61. doi: 10.1105/tpc.110.074229. Epub 2010 Aug 20.

PMID:
20729383
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Quantifying whole transcriptome size, a prerequisite for understanding transcriptome evolution across species: an example from a plant allopolyploid.

Coate JE, Doyle JJ.

Genome Biol Evol. 2010;2:534-46. doi: 10.1093/gbe/evq038. Epub 2010 Jul 5.

PMID:
20671102
[PubMed - indexed for MEDLINE]
Free PMC Article

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