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Results: 1 to 20 of 878

1.

Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle.

Brøndum RF, Guldbrandtsen B, Sahana G, Lund MS, Su G.

BMC Genomics. 2014 Aug 27;15(1):728. doi: 10.1186/1471-2164-15-728.

PMID:
25164068
[PubMed - in process]
Free PMC Article
2.

Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses.

Pightling AW, Petronella N, Pagotto F.

PLoS One. 2014 Aug 21;9(8):e104579. doi: 10.1371/journal.pone.0104579. eCollection 2014.

PMID:
25144537
[PubMed - in process]
Free PMC Article
3.

Comparative analysis of Salmonella susceptibility and tolerance to the biocide chlorhexidine identifies a complex cellular defense network.

Condell O, Power KA, Händler K, Finn S, Sheridan A, Sergeant K, Renaut J, Burgess CM, Hinton JC, Nally JE, Fanning S.

Front Microbiol. 2014 Aug 1;5:373. doi: 10.3389/fmicb.2014.00373. eCollection 2014.

PMID:
25136333
[PubMed]
Free PMC Article
4.

Genome-wide characterization of insertion and deletion variation in chicken using next generation sequencing.

Yan Y, Yi G, Sun C, Qu L, Yang N.

PLoS One. 2014 Aug 18;9(8):e104652. doi: 10.1371/journal.pone.0104652. eCollection 2014.

PMID:
25133774
[PubMed - in process]
Free PMC Article
5.

Wnt Pathway Activation Increases Hypoxia Tolerance during Development.

Gersten M, Zhou D, Azad P, Haddad GG, Subramaniam S.

PLoS One. 2014 Aug 5;9(8):e103292. doi: 10.1371/journal.pone.0103292. eCollection 2014.

PMID:
25093834
[PubMed - in process]
Free PMC Article
6.

RandAL: a randomized approach to aligning DNA sequences to reference genomes.

Vo NS, Tran Q, Niraula N, Phan V.

BMC Genomics. 2014 Jul 14;15 Suppl 5:S2. doi: 10.1186/1471-2164-15-S5-S2. Epub 2014 Jul 14.

PMID:
25081493
[PubMed - in process]
Free PMC Article
7.

Validation and assessment of variant calling pipelines for next-generation sequencing.

Pirooznia M, Kramer M, Parla J, Goes FS, Potash JB, McCombie WR, Zandi PP.

Hum Genomics. 2014 Jul 30;8:14. doi: 10.1186/1479-7364-8-14.

PMID:
25078893
[PubMed - in process]
Free PMC Article
8.

Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites.

Firouzi S, López Y, Suzuki Y, Nakai K, Sugano S, Yamochi T, Watanabe T.

Genome Med. 2014 Jun 27;6(6):46. doi: 10.1186/gm568. eCollection 2014.

PMID:
25028597
[PubMed]
Free PMC Article
9.

An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data.

Azam S, Rathore A, Shah TM, Telluri M, Amindala B, Ruperao P, Katta MA, Varshney RK.

PLoS One. 2014 Jul 8;9(7):e101754. doi: 10.1371/journal.pone.0101754. eCollection 2014.

PMID:
25003610
[PubMed - in process]
Free PMC Article
10.

Evaluation and optimisation of indel detection workflows for ion torrent sequencing of the BRCA1 and BRCA2 genes.

Yeo ZX, Wong JC, Rozen SG, Lee AS.

BMC Genomics. 2014 Jun 24;15:516. doi: 10.1186/1471-2164-15-516.

PMID:
24962530
[PubMed - in process]
Free PMC Article
11.

Nucleosome organization in the vicinity of transcription factor binding sites in the human genome.

Nie Y, Cheng X, Chen J, Sun X.

BMC Genomics. 2014 Jun 19;15:493. doi: 10.1186/1471-2164-15-493.

PMID:
24942981
[PubMed - in process]
Free PMC Article
12.

Insight Into Genomic Changes Accompanying Divergence: Genetic Linkage Maps and Synteny of Lucania goodei and L. parva Reveal a Robertsonian Fusion.

Berdan EL, Kozak GM, Ming R, Rayburn AL, Kiehart R, Fuller RC.

G3 (Bethesda). 2014 Jun 3;4(8):1363-72. doi: 10.1534/g3.114.012096.

PMID:
24898707
[PubMed - in process]
Free PMC Article
13.

Dual RNA-seq of parasite and host reveals gene expression dynamics during filarial worm-mosquito interactions.

Choi YJ, Aliota MT, Mayhew GF, Erickson SM, Christensen BM.

PLoS Negl Trop Dis. 2014 May 22;8(5):e2905. doi: 10.1371/journal.pntd.0002905. eCollection 2014 May.

PMID:
24853112
[PubMed - in process]
Free PMC Article
14.

Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice.

Wu Y, Zhang W, Jiang J.

PLoS Genet. 2014 May 22;10(5):e1004378. doi: 10.1371/journal.pgen.1004378. eCollection 2014 May.

PMID:
24852592
[PubMed - in process]
Free PMC Article
15.

GPU-BSM: a GPU-based tool to map bisulfite-treated reads.

Manconi A, Orro A, Manca E, Armano G, Milanesi L.

PLoS One. 2014 May 19;9(5):e97277. doi: 10.1371/journal.pone.0097277. eCollection 2014.

PMID:
24842718
[PubMed - in process]
Free PMC Article
16.

Objective and comprehensive evaluation of bisulfite short read mapping tools.

Tran H, Porter J, Sun MA, Xie H, Zhang L.

Adv Bioinformatics. 2014;2014:472045. doi: 10.1155/2014/472045. Epub 2014 Apr 15.

PMID:
24839440
[PubMed]
Free PMC Article
17.

Performance comparison of SNP detection tools with illumina exome sequencing data--an assessment using both family pedigree information and sample-matched SNP array data.

Yi M, Zhao Y, Jia L, He M, Kebebew E, Stephens RM.

Nucleic Acids Res. 2014;42(12):e101. doi: 10.1093/nar/gku392. Epub 2014 May 15.

PMID:
24831545
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The prevalence of species and strains in the human microbiome: a resource for experimental efforts.

Kraal L, Abubucker S, Kota K, Fischbach MA, Mitreva M.

PLoS One. 2014 May 14;9(5):e97279. doi: 10.1371/journal.pone.0097279. eCollection 2014.

PMID:
24827833
[PubMed - in process]
Free PMC Article
19.

Evaluation and comparison of multiple aligners for next-generation sequencing data analysis.

Shang J, Zhu F, Vongsangnak W, Tang Y, Zhang W, Shen B.

Biomed Res Int. 2014;2014:309650. doi: 10.1155/2014/309650. Epub 2014 Mar 23.

PMID:
24779008
[PubMed - in process]
Free PMC Article
20.

Deep sequencing strategies for mapping and identifying mutations from genetic screens.

Zuryn S, Jarriault S.

Worm. 2013 Jul 1;2(3):e25081. doi: 10.4161/worm.25081. Epub 2013 May 21. Review.

PMID:
24778934
[PubMed]
Free PMC Article

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