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Sources of Variability in a Synthetic Gene Oscillator.

Veliz-Cuba A, Hirning AJ, Atanas AA, Hussain F, Vancia F, Josić K, Bennett MR.

PLoS Comput Biol. 2015 Dec 22;11(12):e1004674. doi: 10.1371/journal.pcbi.1004674. eCollection 2015 Dec.


Build to understand: synthetic approaches to biology.

Wang LZ, Wu F, Flores K, Lai YC, Wang X.

Integr Biol (Camb). 2016 Apr 18;8(4):394-408. doi: 10.1039/c5ib00252d. Epub 2015 Dec 21.


The free energy cost of accurate biochemical oscillations.

Cao Y, Wang H, Ouyang Q, Tu Y.

Nat Phys. 2015 Sep;11(9):772-778. Epub 2015 Jul 27.


Robustness of cell cycle control and flexible orders of signaling events.

Zhu H, Mao Y.

Sci Rep. 2015 Sep 30;5:14627. doi: 10.1038/srep14627.


Effects of acute tryptophan depletion on raphé functional connectivity in depression.

Weinstein JJ, Rogers BP, Taylor WD, Boyd BD, Cowan RL, Shelton KM, Salomon RM.

Psychiatry Res. 2015 Nov 30;234(2):164-71. doi: 10.1016/j.pscychresns.2015.08.015. Epub 2015 Sep 14.


Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Shopera T, Henson WR, Ng A, Lee YJ, Ng K, Moon TS.

Nucleic Acids Res. 2015 Oct 15;43(18):9086-94. doi: 10.1093/nar/gkv936. Epub 2015 Sep 17.


A balance of positive and negative regulators determines the pace of the segmentation clock.

Wiedermann G, Bone RA, Silva JC, Bjorklund M, Murray PJ, Dale JK.

Elife. 2015 Sep 10;4:e05842. doi: 10.7554/eLife.05842.


An Optimal Free Energy Dissipation Strategy of the MinCDE Oscillator in Regulating Symmetric Bacterial Cell Division.

Xiong L, Lan G.

PLoS Comput Biol. 2015 Aug 28;11(8):e1004351. doi: 10.1371/journal.pcbi.1004351. eCollection 2015 Aug.


SYNTHETIC BIOLOGY. Emergent genetic oscillations in a synthetic microbial consortium.

Chen Y, Kim JK, Hirning AJ, Josić K, Bennett MR.

Science. 2015 Aug 28;349(6251):986-9. doi: 10.1126/science.aaa3794.


Design principles for robust oscillatory behavior.

Castillo-Hair SM, Villota ER, Coronado AM.

Syst Synth Biol. 2015 Sep;9(3):125-33. doi: 10.1007/s11693-015-9178-6. Epub 2015 Aug 5.


Influence of parameter values on the oscillation sensitivities of two p53-Mdm2 models.

Cuba CE, Valle AR, Ayala-Charca G, Villota ER, Coronado AM.

Syst Synth Biol. 2015 Sep;9(3):77-84. doi: 10.1007/s11693-015-9173-y. Epub 2015 Jun 5.


Robustness and period sensitivity analysis of minimal models for biochemical oscillators.

Caicedo-Casso A, Kang HW, Lim S, Hong CI.

Sci Rep. 2015 Aug 12;5:13161. doi: 10.1038/srep13161.


Interlocked positive and negative feedback network motifs regulate β-catenin activity in the adherens junction pathway.

Klinke DJ 2nd, Horvath N, Cuppett V, Wu Y, Deng W, Kanj R.

Mol Biol Cell. 2015 Nov 5;26(22):4135-48. doi: 10.1091/mbc.E15-02-0083. Epub 2015 Jul 29.


DYVIPAC: an integrated analysis and visualisation framework to probe multi-dimensional biological networks.

Nguyen LK, Degasperi A, Cotter P, Kholodenko BN.

Sci Rep. 2015 Jul 29;5:12569. doi: 10.1038/srep12569.


Modeling for (physical) biologists: an introduction to the rule-based approach.

Chylek LA, Harris LA, Faeder JR, Hlavacek WS.

Phys Biol. 2015 Jul 16;12(4):045007. doi: 10.1088/1478-3975/12/4/045007. Review.


An Atlas of Network Topologies Reveals Design Principles for Caenorhabditis elegans Vulval Precursor Cell Fate Patterning.

Ping X, Tang C.

PLoS One. 2015 Jun 26;10(6):e0131397. doi: 10.1371/journal.pone.0131397. eCollection 2015.


Tensor methods for parameter estimation and bifurcation analysis of stochastic reaction networks.

Liao S, Vejchodský T, Erban R.

J R Soc Interface. 2015 Jul 6;12(108):20150233. doi: 10.1098/rsif.2015.0233.


Mathematical modeling and validation of glucose compensation of the neurospora circadian clock.

Dovzhenok AA, Baek M, Lim S, Hong CI.

Biophys J. 2015 Apr 7;108(7):1830-9. doi: 10.1016/j.bpj.2015.01.043.


Estimating cellular parameters through optimization procedures: elementary principles and applications.

Kimura A, Celani A, Nagao H, Stasevich T, Nakamura K.

Front Physiol. 2015 Mar 3;6:60. doi: 10.3389/fphys.2015.00060. eCollection 2015. Review.


Computational analysis of an autophagy/translation switch based on mutual inhibition of MTORC1 and ULK1.

Szymańska P, Martin KR, MacKeigan JP, Hlavacek WS, Lipniacki T.

PLoS One. 2015 Mar 11;10(3):e0116550. doi: 10.1371/journal.pone.0116550. eCollection 2015.

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