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Items: 1 to 20 of 64


The AP-2 Transcription Factor APTF-2 Is Required for Neuroblast and Epidermal Morphogenesis in Caenorhabditis elegans Embryogenesis.

Budirahardja Y, Tan PY, Doan T, Weisdepp P, Zaidel-Bar R.

PLoS Genet. 2016 May 13;12(5):e1006048. doi: 10.1371/journal.pgen.1006048. eCollection 2016 May.


Overlapping cell population expression profiling and regulatory inference in C. elegans.

Burdick J, Walton T, Preston E, Zacharias A, Raj A, Murray JI.

BMC Genomics. 2016 Feb 29;17:159. doi: 10.1186/s12864-016-2482-z.


Combinatorial decoding of the invariant C. elegans embryonic lineage in space and time.

Zacharias AL, Murray JI.

Genesis. 2016 Apr;54(4):182-97. doi: 10.1002/dvg.22928. Epub 2016 Mar 19. Review.


The Caenorhabditis elegans Ephrin EFN-4 Functions Non-cell Autonomously with Heparan Sulfate Proteoglycans to Promote Axon Outgrowth and Branching.

Schwieterman AA, Steves AN, Yee V, Donelson CJ, Bentley MR, Santorella EM, Mehlenbacher TV, Pital A, Howard AM, Wilson MR, Ereddia DE, Effrein KS, McMurry JL, Ackley BD, Chisholm AD, Hudson ML.

Genetics. 2016 Feb;202(2):639-60. doi: 10.1534/genetics.115.185298. Epub 2015 Dec 8.


Big Data in Caenorhabditis elegans: quo vadis?

Hutter H, Moerman D.

Mol Biol Cell. 2015 Nov 5;26(22):3909-14. doi: 10.1091/mbc.E15-05-0312.


Quantitative Differences in Nuclear β-catenin and TCF Pattern Embryonic Cells in C. elegans.

Zacharias AL, Walton T, Preston E, Murray JI.

PLoS Genet. 2015 Oct 21;11(10):e1005585. doi: 10.1371/journal.pgen.1005585. eCollection 2015 Oct.


Segment and fit thresholding: a new method for image analysis applied to microarray and immunofluorescence data.

Ensink E, Sinha J, Sinha A, Tang H, Calderone HM, Hostetter G, Winter J, Cherba D, Brand RE, Allen PJ, Sempere LF, Haab BB.

Anal Chem. 2015 Oct 6;87(19):9715-21. doi: 10.1021/acs.analchem.5b03159. Epub 2015 Sep 11.


C. elegans SoxB genes are dispensable for embryonic neurogenesis but required for terminal differentiation of specific neuron types.

Vidal B, Santella A, Serrano-Saiz E, Bao Z, Chuang CF, Hobert O.

Development. 2015 Jul 15;142(14):2464-77. doi: 10.1242/dev.125740. Epub 2015 Jul 7.


Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry.

Ho VW, Wong MK, An X, Guan D, Shao J, Ng HC, Ren X, He K, Liao J, Ang Y, Chen L, Huang X, Yan B, Xia Y, Chan LL, Chow KL, Yan H, Zhao Z.

Mol Syst Biol. 2015 Jun 10;11(6):814. doi: 10.15252/msb.20145857.


Single Cell Quantification of Reporter Gene Expression in Live Adult Caenorhabditis elegans Reveals Reproducible Cell-Specific Expression Patterns and Underlying Biological Variation.

Mendenhall AR, Tedesco PM, Sands B, Johnson TE, Brent R.

PLoS One. 2015 May 6;10(5):e0124289. doi: 10.1371/journal.pone.0124289. eCollection 2015.


Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.

Zhan M, Crane MM, Entchev EV, Caballero A, Fernandes de Abreu DA, Ch'ng Q, Lu H.

PLoS Comput Biol. 2015 Apr 24;11(4):e1004194. doi: 10.1371/journal.pcbi.1004194. eCollection 2015 Apr.


The Bicoid class homeodomain factors ceh-36/OTX and unc-30/PITX cooperate in C. elegans embryonic progenitor cells to regulate robust development.

Walton T, Preston E, Nair G, Zacharias AL, Raj A, Murray JI.

PLoS Genet. 2015 Mar 4;11(3):e1005003. doi: 10.1371/journal.pgen.1005003. eCollection 2015 Mar.


E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis.

Du Z, He F, Yu Z, Bowerman B, Bao Z.

Dev Biol. 2015 Feb 15;398(2):267-79. doi: 10.1016/j.ydbio.2014.12.009. Epub 2014 Dec 15.


Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.

Hashimshony T, Feder M, Levin M, Hall BK, Yanai I.

Nature. 2015 Mar 12;519(7542):219-22. doi: 10.1038/nature13996. Epub 2014 Dec 10.


Regulatory analysis of the C. elegans genome with spatiotemporal resolution.

Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, Reinke V, Waterston RH, Snyder M.

Nature. 2014 Aug 28;512(7515):400-5. doi: 10.1038/nature13497. Erratum in: Nature. 2015 Dec 3;528(7580):152.


Animal microsurgery using microfluidics.

Stirman JN, Harker B, Lu H, Crane MM.

Curr Opin Biotechnol. 2014 Feb;25:24-9. doi: 10.1016/j.copbio.2013.08.007. Epub 2013 Sep 12. Review.


De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis.

Du Z, Santella A, He F, Tiongson M, Bao Z.

Cell. 2014 Jan 16;156(1-2):359-72. doi: 10.1016/j.cell.2013.11.046.


Towards 3D in silico modeling of the sea urchin embryonic development.

Rizzi B, Peyrieras N.

J Chem Biol. 2013 Sep 13;7(1):17-28. doi: 10.1007/s12154-013-0101-x. Review.


A novel cell nuclei segmentation method for 3D C. elegans embryonic time-lapse images.

Chen L, Chan LL, Zhao Z, Yan H.

BMC Bioinformatics. 2013 Nov 19;14:328. doi: 10.1186/1471-2105-14-328.


Building quantitative, three-dimensional atlases of gene expression and morphology at cellular resolution.

Knowles DW, Biggin MD.

Wiley Interdiscip Rev Dev Biol. 2013 Nov-Dec;2(6):767-79. doi: 10.1002/wdev.107. Epub 2013 Feb 4. Review.

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