Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 169

1.

Otx2 and Oct4 Drive Early Enhancer Activation during Embryonic Stem Cell Transition from Naive Pluripotency.

Yang SH, Kalkan T, Morissroe C, Marks H, Stunnenberg H, Smith A, Sharrocks AD.

Cell Rep. 2014 Jun 26;7(6):1968-81. doi: 10.1016/j.celrep.2014.05.037. Epub 2014 Jun 12.

PMID:
24931607
[PubMed - in process]
Free PMC Article
2.

A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.

Lindemose S, Jensen MK, de Velde JV, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, Masi FD.

Nucleic Acids Res. 2014 Aug 1;42(12):7681-93. doi: 10.1093/nar/gku502. Epub 2014 Jun 9.

PMID:
24914054
[PubMed - in process]
Free PMC Article
3.

An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding.

Mahony S, Edwards MD, Mazzoni EO, Sherwood RI, Kakumanu A, Morrison CA, Wichterle H, Gifford DK.

PLoS Comput Biol. 2014 Mar 27;10(3):e1003501. doi: 10.1371/journal.pcbi.1003501. eCollection 2014 Mar.

PMID:
24675637
[PubMed - in process]
Free PMC Article
4.

A combination of activation and repression by a colinear Hox code controls forelimb-restricted expression of Tbx5 and reveals Hox protein specificity.

Nishimoto S, Minguillon C, Wood S, Logan MP.

PLoS Genet. 2014 Mar 20;10(3):e1004245. doi: 10.1371/journal.pgen.1004245. eCollection 2014 Mar.

PMID:
24651482
[PubMed - in process]
Free PMC Article
5.

An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins.

Gupta A, Christensen RG, Bell HA, Goodwin M, Patel RY, Pandey M, Enuameh MS, Rayla AL, Zhu C, Thibodeau-Beganny S, Brodsky MH, Joung JK, Wolfe SA, Stormo GD.

Nucleic Acids Res. 2014 Apr;42(8):4800-12. doi: 10.1093/nar/gku132. Epub 2014 Feb 12.

PMID:
24523353
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.

Orenstein Y, Shamir R.

Nucleic Acids Res. 2014 Apr;42(8):e63. doi: 10.1093/nar/gku117. Epub 2014 Feb 5.

PMID:
24500199
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Hox targets and cellular functions.

Sánchez-Herrero E.

Scientifica (Cairo). 2013;2013:738257. doi: 10.1155/2013/738257. Epub 2013 Dec 30. Erratum in: Scientifica (Cairo). 2014;2014:529298.

PMID:
24490109
[PubMed]
Free PMC Article
8.

Genomic and computational approaches to dissect the mechanisms of STAT3's universal and cell type-specific functions.

Hutchins AP, Diez D, Miranda-Saavedra D.

JAKSTAT. 2013 Oct 1;2(4):e25097. doi: 10.4161/jkst.25097. Epub 2013 May 20. Review.

PMID:
24416643
[PubMed]
Free PMC Article
9.

The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types.

Zhang F, Bhattacharya A, Nelson JC, Abe N, Gordon P, Lloret-Fernandez C, Maicas M, Flames N, Mann RS, Colón-Ramos DA, Hobert O.

Development. 2014 Jan;141(2):422-35. doi: 10.1242/dev.099721. Epub 2013 Dec 18.

PMID:
24353061
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments.

Kheradpour P, Kellis M.

Nucleic Acids Res. 2014 Mar;42(5):2976-87. doi: 10.1093/nar/gkt1249. Epub 2013 Dec 13.

PMID:
24335146
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Fine mapping of the celiac disease-associated LPP locus reveals a potential functional variant.

Almeida R, Ricaño-Ponce I, Kumar V, Deelen P, Szperl A, Trynka G, Gutierrez-Achury J, Kanterakis A, Westra HJ, Franke L, Swertz MA, Platteel M, Bilbao JR, Barisani D, Greco L, Mearin L, Wolters VM, Mulder C, Mazzilli MC, Sood A, Cukrowska B, Núñez C, Pratesi R, Withoff S, Wijmenga C.

Hum Mol Genet. 2014 May 1;23(9):2481-9. doi: 10.1093/hmg/ddt619. Epub 2013 Dec 11.

PMID:
24334606
[PubMed - in process]
Free PMC Article
12.

Protein-DNA binding: complexities and multi-protein codes.

Siggers T, Gordân R.

Nucleic Acids Res. 2014 Feb;42(4):2099-111. doi: 10.1093/nar/gkt1112. Epub 2013 Nov 16. Review.

PMID:
24243859
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

TFBSshape: a motif database for DNA shape features of transcription factor binding sites.

Yang L, Zhou T, Dror I, Mathelier A, Wasserman WW, Gordân R, Rohs R.

Nucleic Acids Res. 2014 Jan;42(Database issue):D148-55. doi: 10.1093/nar/gkt1087. Epub 2013 Nov 7.

PMID:
24214955
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression.

Hansen AS, O'Shea EK.

Mol Syst Biol. 2013 Nov 5;9:704. doi: 10.1038/msb.2013.56.

PMID:
24189399
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example.

Gu G, Wang T, Yang Y, Xu X, Wang J.

PLoS One. 2013 Oct 10;8(10):e76109. doi: 10.1371/journal.pone.0076109. eCollection 2013.

PMID:
24130762
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Distinct regulatory mechanisms act to establish and maintain Pax3 expression in the developing neural tube.

Moore S, Ribes V, Terriente J, Wilkinson D, Relaix F, Briscoe J.

PLoS Genet. 2013;9(10):e1003811. doi: 10.1371/journal.pgen.1003811. Epub 2013 Oct 3.

PMID:
24098141
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Covariation between homeodomain transcription factors and the shape of their DNA binding sites.

Dror I, Zhou T, Mandel-Gutfreund Y, Rohs R.

Nucleic Acids Res. 2014 Jan;42(1):430-41. doi: 10.1093/nar/gkt862. Epub 2013 Sep 27.

PMID:
24078250
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations.

Ibrahim DM, Hansen P, Rödelsperger C, Stiege AC, Doelken SC, Horn D, Jäger M, Janetzki C, Krawitz P, Leschik G, Wagner F, Scheuer T, Schmidt-von Kegler M, Seemann P, Timmermann B, Robinson PN, Mundlos S, Hecht J.

Genome Res. 2013 Dec;23(12):2091-102. doi: 10.1101/gr.157610.113. Epub 2013 Aug 30.

PMID:
23995701
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Saltatory remodeling of Hox chromatin in response to rostrocaudal patterning signals.

Mazzoni EO, Mahony S, Peljto M, Patel T, Thornton SR, McCuine S, Reeder C, Boyer LA, Young RA, Gifford DK, Wichterle H.

Nat Neurosci. 2013 Sep;16(9):1191-8. doi: 10.1038/nn.3490. Epub 2013 Aug 18.

PMID:
23955559
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.

Jensen MK, Lindemose S, de Masi F, Reimer JJ, Nielsen M, Perera V, Workman CT, Turck F, Grant MR, Mundy J, Petersen M, Skriver K.

FEBS Open Bio. 2013 Jul 29;3:321-7. doi: 10.1016/j.fob.2013.07.006. eCollection 2013.

PMID:
23951554
[PubMed]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk