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Items: 1 to 20 of 69


Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut.

Castro-Mejía JL, Muhammed MK, Kot W, Neve H, Franz CM, Hansen LH, Vogensen FK, Nielsen DS.

Microbiome. 2015 Nov 17;3:64. doi: 10.1186/s40168-015-0131-4.


Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis.

Conceição-Neto N, Zeller M, Lefrère H, De Bruyn P, Beller L, Deboutte W, Yinda CK, Lavigne R, Maes P, Van Ranst M, Heylen E, Matthijnssens J.

Sci Rep. 2015 Nov 12;5:16532. doi: 10.1038/srep16532.


Pathological and therapeutic interactions between bacteriophages, microbes and the host in inflammatory bowel disease.

Babickova J, Gardlik R.

World J Gastroenterol. 2015 Oct 28;21(40):11321-30. doi: 10.3748/wjg.v21.i40.11321. Review.


The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.

Hannigan GD, Meisel JS, Tyldsley AS, Zheng Q, Hodkinson BP, SanMiguel AJ, Minot S, Bushman FD, Grice EA.

MBio. 2015 Oct 20;6(5):e01578-15. doi: 10.1128/mBio.01578-15.


Direct sequencing of human gut virome fractions obtained by flow cytometry.

Džunková M, D'Auria G, Moya A.

Front Microbiol. 2015 Sep 8;6:955. doi: 10.3389/fmicb.2015.00955. eCollection 2015.


The human gut virome: a multifaceted majority.

Ogilvie LA, Jones BV.

Front Microbiol. 2015 Sep 11;6:918. doi: 10.3389/fmicb.2015.00918. eCollection 2015. Review.


Early life dynamics of the human gut virome and bacterial microbiome in infants.

Lim ES, Zhou Y, Zhao G, Bauer IK, Droit L, Ndao IM, Warner BB, Tarr PI, Wang D, Holtz LR.

Nat Med. 2015 Oct;21(10):1228-34. doi: 10.1038/nm.3950. Epub 2015 Sep 14.


Gut DNA viromes of Malawian twins discordant for severe acute malnutrition.

Reyes A, Blanton LV, Cao S, Zhao G, Manary M, Trehan I, Smith MI, Wang D, Virgin HW, Rohwer F, Gordon JI.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):11941-6. doi: 10.1073/pnas.1514285112. Epub 2015 Sep 8.


Klebsiella pneumoniae subsp. pneumoniae-bacteriophage combination from the caecal effluent of a healthy woman.

Hoyles L, Murphy J, Neve H, Heller KJ, Turton JF, Mahony J, Sanderson JD, Hudspith B, Gibson GR, McCartney AL, van Sinderen D.

PeerJ. 2015 Jul 28;3:e1061. doi: 10.7717/peerj.1061. eCollection 2015.


Total Virus and Bacteria Concentrations in Indoor and Outdoor Air.

Prussin AJ 2nd, Garcia EB, Marr LC.

Environ Sci Technol Lett. 2015;2(4):84-88.


Transcriptome analysis of bacteriophage communities in periodontal health and disease.

Santiago-Rodriguez TM, Naidu M, Abeles SR, Boehm TK, Ly M, Pride DT.

BMC Genomics. 2015 Jul 28;16:549. doi: 10.1186/s12864-015-1781-0.


Gut inflammation and immunity: what is the role of the human gut virome?

Focà A, Liberto MC, Quirino A, Marascio N, Zicca E, Pavia G.

Mediators Inflamm. 2015;2015:326032. doi: 10.1155/2015/326032. Epub 2015 Apr 7. Review.


Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients.

Young JC, Chehoud C, Bittinger K, Bailey A, Diamond JM, Cantu E, Haas AR, Abbas A, Frye L, Christie JD, Bushman FD, Collman RG.

Am J Transplant. 2015 Jan;15(1):200-9. doi: 10.1111/ajt.13031. Epub 2014 Nov 17.


Geographic variation in the eukaryotic virome of human diarrhea.

Holtz LR, Cao S, Zhao G, Bauer IK, Denno DM, Klein EJ, Antonio M, Stine OC, Snelling TL, Kirkwood CD, Wang D.

Virology. 2014 Nov;468-470:556-64. doi: 10.1016/j.virol.2014.09.012. Epub 2014 Sep 28.


Metagenomic analysis of double-stranded DNA viruses in healthy adults.

Wylie KM, Mihindukulasuriya KA, Zhou Y, Sodergren E, Storch GA, Weinstock GM.

BMC Biol. 2014 Sep 10;12:71. doi: 10.1186/s12915-014-0071-7.


Conservation of streptococcal CRISPRs on human skin and saliva.

Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT.

BMC Microbiol. 2014 Jun 6;14:146. doi: 10.1186/1471-2180-14-146.


Bacteriophages: an underestimated role in human and animal health?

De Paepe M, Leclerc M, Tinsley CR, Petit MA.

Front Cell Infect Microbiol. 2014 Mar 28;4:39. doi: 10.3389/fcimb.2014.00039. eCollection 2014. Review.


Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs.

Gogleva AA, Gelfand MS, Artamonova II.

BMC Genomics. 2014 Mar 17;15:202. doi: 10.1186/1471-2164-15-202.


The general composition of the faecal virome of pigs depends on age, but not on feeding with a probiotic bacterium.

Sachsenröder J, Twardziok SO, Scheuch M, Johne R.

PLoS One. 2014 Feb 19;9(2):e88888. doi: 10.1371/journal.pone.0088888. eCollection 2014.


Viruses in a 14th-century coprolite.

Appelt S, Fancello L, Le Bailly M, Raoult D, Drancourt M, Desnues C.

Appl Environ Microbiol. 2014 May;80(9):2648-55. doi: 10.1128/AEM.03242-13. Epub 2014 Feb 7.

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