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Items: 1 to 20 of 128

1.

NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease.

Iyappan A, Kawalia SB, Raschka T, Hofmann-Apitius M, Senger P.

J Biomed Semantics. 2016 Jul 8;7:45. doi: 10.1186/s13326-016-0079-8.

2.

The Orthology Ontology: development and applications.

Fernández-Breis JT, Chiba H, Legaz-García Mdel C, Uchiyama I.

J Biomed Semantics. 2016 Jun 4;7(1):34. doi: 10.1186/s13326-016-0077-x.

3.

Generation of open biomedical datasets through ontology-driven transformation and integration processes.

Carmen Legaz-García MD, Miñarro-Giménez JA, Menárguez-Tortosa M, Fernández-Breis JT.

J Biomed Semantics. 2016 Jun 3;7:32. doi: 10.1186/s13326-016-0075-z.

4.

DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases.

Queralt-Rosinach N, Piñero J, Bravo À, Sanz F, Furlong LI.

Bioinformatics. 2016 Jul 15;32(14):2236-8. doi: 10.1093/bioinformatics/btw214. Epub 2016 Apr 22.

5.

A Querying Method over RDF-ized Health Level Seven v2.5 Messages Using Life Science Knowledge Resources.

Kawazoe Y, Imai T, Ohe K.

JMIR Med Inform. 2016 Apr 5;4(2):e12. doi: 10.2196/medinform.5275.

6.

Wikidata as a semantic framework for the Gene Wiki initiative.

Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI.

Database (Oxford). 2016 Mar 17;2016. pii: baw015. doi: 10.1093/database/baw015. Print 2016.

7.

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders.

Hofmann-Apitius M, Ball G, Gebel S, Bagewadi S, de Bono B, Schneider R, Page M, Kodamullil AT, Younesi E, Ebeling C, Tegnér J, Canard L.

Int J Mol Sci. 2015 Dec 7;16(12):29179-206. doi: 10.3390/ijms161226148. Review.

8.

Enhanced reproducibility of SADI web service workflows with Galaxy and Docker.

Aranguren ME, Wilkinson MD.

Gigascience. 2015 Dec 3;4:59. doi: 10.1186/s13742-015-0092-3. eCollection 2015.

9.

Dealing with the Data Deluge: Handling the Multitude Of Chemical Biology Data Sources.

Guha R, Nguyen DT, Southall N, Jadhav A.

Curr Protoc Chem Biol. 2012 Sep;4:193-209. Epub 2012 Sep 1.

10.

Automatic generation of bioinformatics tools for predicting protein-ligand binding sites.

Komiyama Y, Banno M, Ueki K, Saad G, Shimizu K.

Bioinformatics. 2016 Mar 15;32(6):901-7. doi: 10.1093/bioinformatics/btv593. Epub 2015 Nov 5.

11.

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.

van Dam JC, Koehorst JJ, Schaap PJ, Martins Dos Santos VA, Suarez-Diez M.

J Biomed Semantics. 2015 Oct 23;6:39. doi: 10.1186/s13326-015-0038-9. eCollection 2015.

12.

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study.

Mina E, Thompson M, Kaliyaperumal R, Zhao J, der Horst vE, Tatum Z, Hettne KM, Schultes EA, Mons B, Roos M.

J Biomed Semantics. 2015 Feb 9;6:5. doi: 10.1186/2041-1480-6-5. eCollection 2015.

13.

Data integration in biological research: an overview.

Lapatas V, Stefanidakis M, Jimenez RC, Via A, Schneider MV.

J Biol Res (Thessalon). 2015 Sep 2;22(1):9. doi: 10.1186/s40709-015-0032-5. eCollection 2015 Dec. Review.

14.

Drug Normalization for Cancer Therapeutic and Druggable Genome Target Discovery.

Jiang G, Sohn S, Zimmermann MT, Wang C, Liu H, Chute CG.

AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:72-6. eCollection 2015.

15.

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases.

Fu G, Batchelor C, Dumontier M, Hastings J, Willighagen E, Bolton E.

J Cheminform. 2015 Jul 14;7:34. doi: 10.1186/s13321-015-0084-4. eCollection 2015.

16.

SEEK: a systems biology data and model management platform.

Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C.

BMC Syst Biol. 2015 Jul 11;9:33. doi: 10.1186/s12918-015-0174-y.

17.

kpath: integration of metabolic pathway linked data.

Navas-Delgado I, García-Godoy MJ, López-Camacho E, Rybinski M, Reyes-Palomares A, Medina MÁ, Aldana-Montes JF.

Database (Oxford). 2015 Jun 8;2015:bav053. doi: 10.1093/database/bav053. Print 2015.

18.

Next generation distributed computing for cancer research.

Agarwal P, Owzar K.

Cancer Inform. 2015 Apr 27;13(Suppl 7):97-109. doi: 10.4137/CIN.S16344. eCollection 2014. Review.

19.

Semantic enrichment of longitudinal clinical study data using the CDISC standards and the semantic statistics vocabularies.

Leroux H, Lefort L.

J Biomed Semantics. 2015 Apr 9;6:16. doi: 10.1186/s13326-015-0012-6. eCollection 2015.

20.

Implementation of linked data in the life sciences at BioHackathon 2011.

Aoki-Kinoshita KF, Kinjo AR, Morita M, Igarashi Y, Chen YA, Shigemoto Y, Fujisawa T, Akune Y, Katoda T, Kokubu A, Mori T, Nakao M, Kawashima S, Okamoto S, Katayama T, Ogishima S.

J Biomed Semantics. 2015 Jan 7;6:3. doi: 10.1186/2041-1480-6-3. eCollection 2015. Review.

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