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Results: 1 to 20 of 79

Cited In for PubMed (Select 18463633)


SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data.

Perea JA, Deckard A, Haase SB, Harer J.

BMC Bioinformatics. 2015 Aug 16;16(1):257. doi: 10.1186/s12859-015-0645-6.


Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks.

Mori T, Flöttmann M, Krantz M, Akutsu T, Klipp E.

BMC Syst Biol. 2015 Aug 11;9:45. doi: 10.1186/s12918-015-0193-8.


UNCLES: method for the identification of genes differentially consistently co-expressed in a specific subset of datasets.

Abu-Jamous B, Fa R, Roberts DJ, Nandi AK.

BMC Bioinformatics. 2015 Jun 4;16:184. doi: 10.1186/s12859-015-0614-0.


BioMiner: Paving the Way for Personalized Medicine.

Bauer C, Stec K, Glintschert A, Gruden K, Schichor C, Or-Guil M, Selbig J, Schuchhardt J.

Cancer Inform. 2015 Apr 20;14:55-63. doi: 10.4137/CIN.S20910. eCollection 2015.


Cell fate reprogramming by control of intracellular network dynamics.

Zañudo JG, Albert R.

PLoS Comput Biol. 2015 Apr 7;11(4):e1004193. doi: 10.1371/journal.pcbi.1004193. eCollection 2015 Apr.


The Chlamydomonas cell cycle.

Cross FR, Umen JG.

Plant J. 2015 May;82(3):370-92. doi: 10.1111/tpj.12795. Epub 2015 Apr 15.


Ultrasensitivity part III: cascades, bistable switches, and oscillators.

Ferrell JE Jr, Ha SH.

Trends Biochem Sci. 2014 Dec;39(12):612-8. doi: 10.1016/j.tibs.2014.10.002. Epub 2014 Nov 10. Review.


A novel role for lncRNAs in cell cycle control during stress adaptation.

Solé C, Nadal-Ribelles M, de Nadal E, Posas F.

Curr Genet. 2015 Aug;61(3):299-308. doi: 10.1007/s00294-014-0453-y. Epub 2014 Sep 28.


Checkpoints couple transcription network oscillator dynamics to cell-cycle progression.

Bristow SL, Leman AR, Simmons Kovacs LA, Deckard A, Harer J, Haase SB.

Genome Biol. 2014 Sep 5;15(9):446. doi: 10.1186/s13059-014-0446-7.


TEMPI: probabilistic modeling time-evolving differential PPI networks with multiPle information.

Kim Y, Jang JH, Choi S, Hwang D.

Bioinformatics. 2014 Sep 1;30(17):i453-60. doi: 10.1093/bioinformatics/btu454.


Silencing of Dicer1 temporally separates pro- and anti-apoptotic signaling and confers susceptibility to chemotherapy in p53 mutated cells.

Nekova TS, Kneitz S, Einsele H, Stuhler G.

Cell Cycle. 2014;13(14):2192-8. doi: 10.4161/cc.29216. Epub 2014 May 20.


Regulation of a transcription factor network by Cdk1 coordinates late cell cycle gene expression.

Landry BD, Mapa CE, Arsenault HE, Poti KE, Benanti JA.

EMBO J. 2014 May 2;33(9):1044-60. doi: 10.1002/embj.201386877. Epub 2014 Apr 8.


Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression.

Eser P, Demel C, Maier KC, Schwalb B, Pirkl N, Martin DE, Cramer P, Tresch A.

Mol Syst Biol. 2014 Jan 30;10:717. doi: 10.1002/msb.134886. Print 2014. Erratum in: Mol Syst Biol. 2014;10:726.


Topology and control of the cell-cycle-regulated transcriptional circuitry.

Haase SB, Wittenberg C.

Genetics. 2014 Jan;196(1):65-90. doi: 10.1534/genetics.113.152595. Review.


Beta-naphthoflavone (DB06732) mediates estrogen receptor-positive breast cancer cell cycle arrest through AhR-dependent regulation of PI3K/AKT and MAPK/ERK signaling.

Wang C, Xu CX, Bu Y, Bottum KM, Tischkau SA.

Carcinogenesis. 2014 Mar;35(3):703-13. doi: 10.1093/carcin/bgt356. Epub 2013 Oct 26.


Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data.

Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J.

Bioinformatics. 2013 Dec 15;29(24):3174-80. doi: 10.1093/bioinformatics/btt541. Epub 2013 Sep 20.


Inferring Boolean network states from partial information.

Karlebach G.

EURASIP J Bioinform Syst Biol. 2013 Sep 5;2013(1):11. doi: 10.1186/1687-4153-2013-11.


Feedback loops and reciprocal regulation: recurring motifs in the systems biology of the cell cycle.

Ferrell JE Jr.

Curr Opin Cell Biol. 2013 Dec;25(6):676-86. doi: 10.1016/ Epub 2013 Aug 5. Review.


Transcription factor binding profiles reveal cyclic expression of human protein-coding genes and non-coding RNAs.

Cheng C, Ung M, Grant GD, Whitfield ML.

PLoS Comput Biol. 2013;9(7):e1003132. doi: 10.1371/journal.pcbi.1003132. Epub 2013 Jul 11.

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