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Items: 1 to 20 of 293


An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.

Li J, Batcha AM, Grüning B, Mansmann UR.

Cancer Inform. 2016 Apr 10;14(Suppl 5):87-107. doi: 10.4137/CIN.S30793. eCollection 2015. Review.


Genome-Wide Search for Host Association Factors during Ovine Progressive Pneumonia Virus Infection.

Thompson J, Ma F, Quinn M, Xiang SH.

PLoS One. 2016 Mar 7;11(3):e0150344. doi: 10.1371/journal.pone.0150344. eCollection 2016.


Novel somatic mutations identified by whole-exome sequencing in muscle-invasive transitional cell carcinoma of the bladder.

Pan H, Xu X, Wu D, Qiu Q, Zhou S, He X, Zhou Y, Qu P, Hou J, He J, Zhou J.

Oncol Lett. 2016 Feb;11(2):1486-1492. Epub 2016 Jan 8.


Emerging technologies in paediatric leukaemia.

Dixon-McIver A.

Transl Pediatr. 2015 Apr;4(2):116-24. doi: 10.3978/j.issn.2224-4336.2015.03.02. Review.


Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma.

Cheng C, Zhou Y, Li H, Xiong T, Li S, Bi Y, Kong P, Wang F, Cui H, Li Y, Fang X, Yan T, Li Y, Wang J, Yang B, Zhang L, Jia Z, Song B, Hu X, Yang J, Qiu H, Zhang G, Liu J, Xu E, Shi R, Zhang Y, Liu H, He C, Zhao Z, Qian Y, Rong R, Han Z, Zhang Y, Luo W, Wang J, Peng S, Yang X, Li X, Li L, Fang H, Liu X, Ma L, Chen Y, Guo S, Chen X, Xi Y, Li G, Liang J, Yang X, Guo J, Jia J, Li Q, Cheng X, Zhan Q, Cui Y.

Am J Hum Genet. 2016 Feb 4;98(2):256-74. doi: 10.1016/j.ajhg.2015.12.013. Epub 2016 Jan 28.


Chromothripsis and Kataegis Induced by Telomere Crisis.

Maciejowski J, Li Y, Bosco N, Campbell PJ, de Lange T.

Cell. 2015 Dec 17;163(7):1641-54. doi: 10.1016/j.cell.2015.11.054.


Landscape of gene fusions in epithelial cancers: seq and ye shall find.

Kumar-Sinha C, Kalyana-Sundaram S, Chinnaiyan AM.

Genome Med. 2015 Dec 18;7:129. doi: 10.1186/s13073-015-0252-1.


Circulating Tumor Cells, DNA, and mRNA: Potential for Clinical Utility in Patients With Melanoma.

Xu MJ, Dorsey JF, Amaravadi R, Karakousis G, Simone CB 2nd, Xu X, Xu W, Carpenter EL, Schuchter L, Kao GD.

Oncologist. 2016 Jan;21(1):84-94. doi: 10.1634/theoncologist.2015-0207. Epub 2015 Nov 27.


Advanced Applications of RNA Sequencing and Challenges.

Han Y, Gao S, Muegge K, Zhang W, Zhou B.

Bioinform Biol Insights. 2015 Nov 15;9(Suppl 1):29-46. doi: 10.4137/BBI.S28991. eCollection 2015. Review.


Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST).

Astolfi A, Urbini M, Indio V, Nannini M, Genovese CG, Santini D, Saponara M, Mandrioli A, Ercolani G, Brandi G, Biasco G, Pantaleo MA.

BMC Genomics. 2015 Nov 3;16:892. doi: 10.1186/s12864-015-1982-6.


Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?

LeBlanc VG, Marra MA.

Cancers (Basel). 2015 Sep 23;7(3):1925-58. doi: 10.3390/cancers7030869. Review.


Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.

Buisine N, Ruan X, Bilesimo P, Grimaldi A, Alfama G, Ariyaratne P, Mulawadi F, Chen J, Sung WK, Liu ET, Demeneix BA, Ruan Y, Sachs LM.

PLoS One. 2015 Sep 8;10(9):e0137526. doi: 10.1371/journal.pone.0137526. eCollection 2015.


Individualized strategies to target specific mechanisms of disease in malignant melanoma patients displaying unique mutational signatures.

Curiel-Olmo S, García-Castaño A, Vidal R, Pisonero H, Varela I, León-Castillo A, Trillo E, González-Vela C, García-Diaz N, Almaraz C, Moreno T, Cereceda L, Madureira R, Martinez N, Ortiz-Romero P, Valdizán E, Piris M, Vaqué J.

Oncotarget. 2015 Sep 22;6(28):25452-65. doi: 10.18632/oncotarget.4545. Erratum in: Oncotarget. 2016 Feb 2;7(5):6352.


CNV-CH: A Convex Hull Based Segmentation Approach to Detect Copy Number Variations (CNV) Using Next-Generation Sequencing Data.

Sinha R, Samaddar S, De RK.

PLoS One. 2015 Aug 20;10(8):e0135895. doi: 10.1371/journal.pone.0135895. eCollection 2015.


Mate-Pair Sequencing as a Powerful Clinical Tool for the Characterization of Cancers with a DNA Viral Etiology.

Gao G, Smith DI.

Viruses. 2015 Aug 7;7(8):4507-28. doi: 10.3390/v7082831. Review.


A sparse model based detection of copy number variations from exome sequencing data.

Duan J, Wan M, Deng HW, Wang Y.

IEEE Trans Biomed Eng. 2015 Aug 5. [Epub ahead of print]


Comparison and evaluation of two exome capture kits and sequencing platforms for variant calling.

Zhang G, Wang J, Yang J, Li W, Deng Y, Li J, Huang J, Hu S, Zhang B.

BMC Genomics. 2015 Aug 5;16:581. doi: 10.1186/s12864-015-1796-6.


Detection of Genomic Structural Variants from Next-Generation Sequencing Data.

Tattini L, D'Aurizio R, Magi A.

Front Bioeng Biotechnol. 2015 Jun 25;3:92. doi: 10.3389/fbioe.2015.00092. eCollection 2015. Review.

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