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Results: 1 to 20 of 28

1.

Exploring the potential of the platelet membrane proteome as a source of peripheral biomarkers for Alzheimer's disease.

Donovan LE, Dammer EB, Duong DM, Hanfelt JJ, Levey AI, Seyfried NT, Lah JJ.

Alzheimers Res Ther. 2013 Jun 13;5(3):32. [Epub ahead of print]

PMID:
23764030
[PubMed - as supplied by publisher]
Free PMC Article
2.

Coupling of septins to the axial landmark by Bud4 in budding yeast.

Kang PJ, Hood-DeGrenier JK, Park HO.

J Cell Sci. 2013 Mar 1;126(Pt 5):1218-26. doi: 10.1242/jcs.118521. Epub 2013 Jan 23.

PMID:
23345395
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.

Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.

J Proteome Res. 2012 Sep 7;11(9):4722-32. doi: 10.1021/pr300536k. Epub 2012 Aug 15.

PMID:
22871113
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Quantitative proteomics to decipher ubiquitin signaling.

Chen PC, Na CH, Peng J.

Amino Acids. 2012 Sep;43(3):1049-60. doi: 10.1007/s00726-012-1286-y. Epub 2012 Jul 22. Review.

PMID:
22821265
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Coaggregation of RNA-binding proteins in a model of TDP-43 proteinopathy with selective RGG motif methylation and a role for RRM1 ubiquitination.

Dammer EB, Fallini C, Gozal YM, Duong DM, Rossoll W, Xu P, Lah JJ, Levey AI, Peng J, Bassell GJ, Seyfried NT.

PLoS One. 2012;7(6):e38658. doi: 10.1371/journal.pone.0038658. Epub 2012 Jun 21.

PMID:
22761693
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment.

Bustos D, Bakalarski CE, Yang Y, Peng J, Kirkpatrick DS.

Mol Cell Proteomics. 2012 Dec;11(12):1529-40. doi: 10.1074/mcp.R112.019117. Epub 2012 Jun 23. Review.

PMID:
22729469
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Proteasome protease mediated regulation of cytokine induction and inflammation.

Qureshi N, Morrison DC, Reis J.

Biochim Biophys Acta. 2012 Nov;1823(11):2087-93. doi: 10.1016/j.bbamcr.2012.06.016. Epub 2012 Jun 19. Review.

PMID:
22728331
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Analysis of ubiquitinated proteome by quantitative mass spectrometry.

Na CH, Peng J.

Methods Mol Biol. 2012;893:417-29. doi: 10.1007/978-1-61779-885-6_26.

PMID:
22665315
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Analysis of a membrane-enriched proteome from postmortem human brain tissue in Alzheimer's disease.

Donovan LE, Higginbotham L, Dammer EB, Gearing M, Rees HD, Xia Q, Duong DM, Seyfried NT, Lah JJ, Levey AI.

Proteomics Clin Appl. 2012 Apr;6(3-4):201-11. doi: 10.1002/prca.201100068.

PMID:
22532456
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.

Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.

Mol Cell Proteomics. 2012 May;11(5):148-59. doi: 10.1074/mcp.M111.016857. Epub 2012 Apr 14.

PMID:
22505724
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Quantitative analysis of the detergent-insoluble brain proteome in frontotemporal lobar degeneration using SILAC internal standards.

Seyfried NT, Gozal YM, Donovan LE, Herskowitz JH, Dammer EB, Xia Q, Ku L, Chang J, Duong DM, Rees HD, Cooper DS, Glass JD, Gearing M, Tansey MG, Lah JJ, Feng Y, Levey AI, Peng J.

J Proteome Res. 2012 May 4;11(5):2721-38. doi: 10.1021/pr2010814. Epub 2012 Apr 4.

PMID:
22416763
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Deciphering tissue-specific ubiquitylation by mass spectrometry.

Mayor U, Peng J.

Methods Mol Biol. 2012;832:65-80. doi: 10.1007/978-1-61779-474-2_3.

PMID:
22350876
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

E3Net: a system for exploring E3-mediated regulatory networks of cellular functions.

Han Y, Lee H, Park JC, Yi GS.

Mol Cell Proteomics. 2012 Apr;11(4):O111.014076. doi: 10.1074/mcp.O111.014076. Epub 2011 Dec 22.

PMID:
22199232
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Uncovering ubiquitin and ubiquitin-like signaling networks.

Vertegaal AC.

Chem Rev. 2011 Dec 14;111(12):7923-40. doi: 10.1021/cr200187e. Epub 2011 Oct 17. Review. No abstract available.

PMID:
22004258
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.

Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.

J Biol Chem. 2011 Dec 2;286(48):41530-8. doi: 10.1074/jbc.M111.248856. Epub 2011 Oct 10.

PMID:
21987572
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis.

Ziv I, Matiuhin Y, Kirkpatrick DS, Erpapazoglou Z, Leon S, Pantazopoulou M, Kim W, Gygi SP, Haguenauer-Tsapis R, Reis N, Glickman MH, Kleifeld O.

Mol Cell Proteomics. 2011 May;10(5):M111.009753. doi: 10.1074/mcp.M111.009753. Epub 2011 Mar 22.

PMID:
21427232
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Ubiquitinated proteome: ready for global?

Shi Y, Xu P, Qin J.

Mol Cell Proteomics. 2011 May;10(5):R110.006882. doi: 10.1074/mcp.R110.006882. Epub 2011 Feb 21. Review.

PMID:
21339389
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of Alzheimer disease.

Dammer EB, Na CH, Xu P, Seyfried NT, Duong DM, Cheng D, Gearing M, Rees H, Lah JJ, Levey AI, Rush J, Peng J.

J Biol Chem. 2011 Mar 25;286(12):10457-65. doi: 10.1074/jbc.M110.149633. Epub 2011 Jan 28.

PMID:
21278249
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Molecular and proteomic analyses highlight the importance of ubiquitination for the stress resistance, metabolic adaptation, morphogenetic regulation and virulence of Candida albicans.

Leach MD, Stead DA, Argo E, MacCallum DM, Brown AJ.

Mol Microbiol. 2011 Mar;79(6):1574-93. doi: 10.1111/j.1365-2958.2011.07542.x. Epub 2011 Jan 26. Erratum in: Mol Microbiol. 2012 May;84(3):594.

PMID:
21269335
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A data set of human endogenous protein ubiquitination sites.

Shi Y, Chan DW, Jung SY, Malovannaya A, Wang Y, Qin J.

Mol Cell Proteomics. 2011 May;10(5):M110.002089. doi: 10.1074/mcp.M110.002089. Epub 2010 Oct 24.

PMID:
20972266
[PubMed - indexed for MEDLINE]
Free PMC Article

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