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Results: 1 to 20 of 36

Cited In for PubMed (Select 18408731)


Structural insights of the ssDNA binding site in the multifunctional endonuclease AtBFN2 from Arabidopsis thaliana.

Yu TF, Maestre-Reyna M, Ko CY, Ko TP, Sun YJ, Lin TY, Shaw JF, Wang AH.

PLoS One. 2014 Aug 26;9(8):e105821. doi: 10.1371/journal.pone.0105821. eCollection 2014.


Synthesis and characterization of oligonucleotides containing a nitrogen mustard formamidopyrimidine monoadduct of deoxyguanosine.

Christov PP, Son KJ, Rizzo CJ.

Chem Res Toxicol. 2014 Sep 15;27(9):1610-8. doi: 10.1021/tx5002354. Epub 2014 Aug 28.


Structure and function of TatD exonuclease in DNA repair.

Chen YC, Li CL, Hsiao YY, Duh Y, Yuan HS.

Nucleic Acids Res. 2014;42(16):10776-85. doi: 10.1093/nar/gku732. Epub 2014 Aug 11.


The cutting edges in DNA repair, licensing, and fidelity: DNA and RNA repair nucleases sculpt DNA to measure twice, cut once.

Tsutakawa SE, Lafrance-Vanasse J, Tainer JA.

DNA Repair (Amst). 2014 Jul;19:95-107. doi: 10.1016/j.dnarep.2014.03.022. Epub 2014 Apr 19. Review.


Calcium inhibition of ribonuclease H1 two-metal ion catalysis.

Rosta E, Yang W, Hummer G.

J Am Chem Soc. 2014 Feb 26;136(8):3137-44. doi: 10.1021/ja411408x. Epub 2014 Feb 18.


Structure-based function prediction of uncharacterized protein using binding sites comparison.

Konc J, Hodošček M, Ogrizek M, Trykowska Konc J, Janežič D.

PLoS Comput Biol. 2013;9(11):e1003341. doi: 10.1371/journal.pcbi.1003341. Epub 2013 Nov 14.


Uracil in duplex DNA is a substrate for the nucleotide incision repair pathway in human cells.

Prorok P, Alili D, Saint-Pierre C, Gasparutto D, Zharkov DO, Ishchenko AA, Tudek B, Saparbaev MK.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):E3695-703. doi: 10.1073/pnas.1305624110. Epub 2013 Sep 10.


Endonuclease IV Is the major apurinic/apyrimidinic endonuclease in Mycobacterium tuberculosis and is important for protection against oxidative damage.

Puri RV, Singh N, Gupta RK, Tyagi AK.

PLoS One. 2013 Aug 1;8(8):e71535. doi: 10.1371/journal.pone.0071535. Print 2013.


Insight into mechanisms of 3'-5' exonuclease activity and removal of bulky 8,5'-cyclopurine adducts by apurinic/apyrimidinic endonucleases.

Mazouzi A, Vigouroux A, Aikeshev B, Brooks PJ, Saparbaev MK, Morera S, Ishchenko AA.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):E3071-80. doi: 10.1073/pnas.1305281110. Epub 2013 Jul 29.


A conformational switch in PRP8 mediates metal ion coordination that promotes pre-mRNA exon ligation.

Schellenberg MJ, Wu T, Ritchie DB, Fica S, Staley JP, Atta KA, LaPointe P, MacMillan AM.

Nat Struct Mol Biol. 2013 Jun;20(6):728-34. doi: 10.1038/nsmb.2556. Epub 2013 May 19.


A kinetic platform to determine the fate of nitric oxide in Escherichia coli.

Robinson JL, Brynildsen MP.

PLoS Comput Biol. 2013;9(5):e1003049. doi: 10.1371/journal.pcbi.1003049. Epub 2013 May 2.


Alternative excision repair pathways.

Yasui A.

Cold Spring Harb Perspect Biol. 2013 Jun 1;5(6). pii: a012617. doi: 10.1101/cshperspect.a012617. Review.


Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source.

Classen S, Hura GL, Holton JM, Rambo RP, Rodic I, McGuire PJ, Dyer K, Hammel M, Meigs G, Frankel KA, Tainer JA.

J Appl Crystallogr. 2013 Feb 1;46(Pt 1):1-13. Epub 2013 Jan 17.


Conserved structural chemistry for incision activity in structurally non-homologous apurinic/apyrimidinic endonuclease APE1 and endonuclease IV DNA repair enzymes.

Tsutakawa SE, Shin DS, Mol CD, Izumi T, Arvai AS, Mantha AK, Szczesny B, Ivanov IN, Hosfield DJ, Maiti B, Pique ME, Frankel KA, Hitomi K, Cunningham RP, Mitra S, Tainer JA.

J Biol Chem. 2013 Mar 22;288(12):8445-55. doi: 10.1074/jbc.M112.422774. Epub 2013 Jan 25.


The wonders of flap endonucleases: structure, function, mechanism and regulation.

Finger LD, Atack JM, Tsutakawa S, Classen S, Tainer J, Grasby J, Shen B.

Subcell Biochem. 2012;62:301-26. doi: 10.1007/978-94-007-4572-8_16. Review.


Saccharomyces cerevisiae Apn1 mutation affecting stable protein expression mimics catalytic activity impairment: implications for assessing DNA repair capacity in humans.

Morris LP, Degtyareva N, Sheppard C, Heyburn L, Ivanov AA, Kow YW, Doetsch PW.

DNA Repair (Amst). 2012 Sep 1;11(9):753-65. doi: 10.1016/j.dnarep.2012.06.008. Epub 2012 Jul 19.


Watching DNA polymerase η make a phosphodiester bond.

Nakamura T, Zhao Y, Yamagata Y, Hua YJ, Yang W.

Nature. 2012 Jul 11;487(7406):196-201. doi: 10.1038/nature11181.


Double strand binding-single strand incision mechanism for human flap endonuclease: implications for the superfamily.

Tsutakawa SE, Tainer JA.

Mech Ageing Dev. 2012 Apr;133(4):195-202. doi: 10.1016/j.mad.2011.11.009. Epub 2012 Jan 8. Review.


DNA sequence context conceals α-anomeric lesions.

Johnson CN, Spring AM, Desai S, Cunningham RP, Germann MW.

J Mol Biol. 2012 Feb 24;416(3):425-37. doi: 10.1016/j.jmb.2011.12.051. Epub 2011 Dec 29.


In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress.

Nakane S, Wakamatsu T, Masui R, Kuramitsu S, Fukui K.

J Biol Chem. 2011 Dec 2;286(48):41636-46. doi: 10.1074/jbc.M111.293886. Epub 2011 Oct 7.

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