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Items: 1 to 20 of 27

1.

Intra- and inter-individual differences in human sperm DNA methylation.

Dere E, Huse S, Hwang K, Sigman M, Boekelheide K.

Andrology. 2016 Sep;4(5):832-42. doi: 10.1111/andr.12170. Epub 2016 Apr 18.

PMID:
27089098
2.

Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection.

Zhang Q, Zeng X, Younkin S, Kawli T, Snyder MP, Keleş S.

BMC Bioinformatics. 2016 Feb 24;17:96. doi: 10.1186/s12859-016-0957-1.

3.

The landscape of genomic imprinting across diverse adult human tissues.

Baran Y, Subramaniam M, Biton A, Tukiainen T, Tsang EK, Rivas MA, Pirinen M, Gutierrez-Arcelus M, Smith KS, Kukurba KR, Zhang R, Eng C, Torgerson DG, Urbanek C; GTEx Consortium, Li JB, Rodriguez-Santana JR, Burchard EG, Seibold MA, MacArthur DG, Montgomery SB, Zaitlen NA, Lappalainen T.

Genome Res. 2015 Jul;25(7):927-36. doi: 10.1101/gr.192278.115. Epub 2015 May 7.

4.

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data.

Steyaert S, Van Criekinge W, De Paepe A, Denil S, Mensaert K, Vandepitte K, Vanden Berghe W, Trooskens G, De Meyer T.

Nucleic Acids Res. 2014 Nov 10;42(20):e157. doi: 10.1093/nar/gku847. Epub 2014 Sep 18.

5.

Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping.

Light N, Adoue V, Ge B, Chen SH, Kwan T, Pastinen T.

Epigenetics. 2014 Sep;9(9):1238-51. doi: 10.4161/epi.29920. Epub 2014 Jul 23.

6.

Genetic, functional and molecular features of glucocorticoid receptor binding.

Luca F, Maranville JC, Richards AL, Witonsky DB, Stephens M, Di Rienzo A.

PLoS One. 2013 Apr 30;8(4):e61654. doi: 10.1371/journal.pone.0061654. Print 2013.

7.

Allele-specific behavior of molecular networks: understanding small-molecule drug response in yeast.

Zhang F, Gao B, Xu L, Li C, Hao D, Zhang S, Zhou M, Su F, Chen X, Zhi H, Li X.

PLoS One. 2013;8(1):e53581. doi: 10.1371/journal.pone.0053581. Epub 2013 Jan 4.

8.

Interpreting noncoding genetic variation in complex traits and human disease.

Ward LD, Kellis M.

Nat Biotechnol. 2012 Nov;30(11):1095-106. doi: 10.1038/nbt.2422. Epub 2012 Nov 8. Review.

9.

Imprinted gene expression in fetal growth and development.

Lambertini L, Marsit CJ, Sharma P, Maccani M, Ma Y, Hu J, Chen J.

Placenta. 2012 Jun;33(6):480-6. doi: 10.1016/j.placenta.2012.03.001. Epub 2012 Mar 31.

10.

Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene.

Thomas BJ, Rubio ED, Krumm N, Broin PO, Bomsztyk K, Welcsh P, Greally JM, Golden AA, Krumm A.

Epigenetics Chromatin. 2011 Aug 3;4:14. doi: 10.1186/1756-8935-4-14.

11.

AlleleSeq: analysis of allele-specific expression and binding in a network framework.

Rozowsky J, Abyzov A, Wang J, Alves P, Raha D, Harmanci A, Leng J, Bjornson R, Kong Y, Kitabayashi N, Bhardwaj N, Rubin M, Snyder M, Gerstein M.

Mol Syst Biol. 2011 Aug 2;7:522. doi: 10.1038/msb.2011.54.

12.

Integrative DNA methylation and gene expression analyses identify DNA packaging and epigenetic regulatory genes associated with low motility sperm.

Pacheco SE, Houseman EA, Christensen BC, Marsit CJ, Kelsey KT, Sigman M, Boekelheide K.

PLoS One. 2011;6(6):e20280. doi: 10.1371/journal.pone.0020280. Epub 2011 Jun 2.

13.

A Method to Study the Epigenetic Chromatin States of Rare Hematopoietic Stem and Progenitor Cells; MiniChIP-Chip.

Weishaupt H, Attema JL.

Biol Proced Online. 2010 May 15;12(1):1-17. doi: 10.1007/s12575-010-9031-y.

14.

A novel approach identifies new differentially methylated regions (DMRs) associated with imprinted genes.

Choufani S, Shapiro JS, Susiarjo M, Butcher DT, Grafodatskaya D, Lou Y, Ferreira JC, Pinto D, Scherer SW, Shaffer LG, Coullin P, Caniggia I, Beyene J, Slim R, Bartolomei MS, Weksberg R.

Genome Res. 2011 Mar;21(3):465-76. doi: 10.1101/gr.111922.110. Epub 2011 Feb 7.

15.

Chromosome-wide analysis of parental allele-specific chromatin and DNA methylation.

Singh P, Wu X, Lee DH, Li AX, Rauch TA, Pfeifer GP, Mann JR, Szabó PE.

Mol Cell Biol. 2011 Apr;31(8):1757-70. doi: 10.1128/MCB.00961-10. Epub 2011 Feb 14.

16.

Allele-specific DNA methylation: beyond imprinting.

Tycko B.

Hum Mol Genet. 2010 Oct 15;19(R2):R210-20. doi: 10.1093/hmg/ddq376. Epub 2010 Sep 20. Review.

17.

Allele-specific and heritable chromatin signatures in humans.

Birney E, Lieb JD, Furey TS, Crawford GE, Iyer VR.

Hum Mol Genet. 2010 Oct 15;19(R2):R204-9. doi: 10.1093/hmg/ddq404. Epub 2010 Sep 16. Review.

18.

Next-generation genomics: an integrative approach.

Hawkins RD, Hon GC, Ren B.

Nat Rev Genet. 2010 Jul;11(7):476-86. doi: 10.1038/nrg2795. Review.

19.

Allele specific analysis of the ADRBK2 gene in lymphoblastoid cells from bipolar disorder patients.

McCarthy MJ, Barrett TB, Nissen S, Kelsoe JR, Turner EE.

J Psychiatr Res. 2010 Mar;44(4):201-8. doi: 10.1016/j.jpsychires.2009.08.010. Epub 2009 Sep 18.

20.

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human.

Zhang K, Li JB, Gao Y, Egli D, Xie B, Deng J, Li Z, Lee JH, Aach J, Leproust EM, Eggan K, Church GM.

Nat Methods. 2009 Aug;6(8):613-8. doi: 10.1038/nmeth.1357. Epub 2009 Jul 20.

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