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Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera.

Hu J, Jin J, Qian Q, Huang K, Ding Y.

BMC Genomics. 2016 Aug 26;17:684. doi: 10.1186/s12864-016-3032-4.


Identification of conserved and novel microRNAs in Porphyridium purpureum via deep sequencing and bioinformatics.

Gao F, Nan F, Feng J, Lv J, Liu Q, Xie S.

BMC Genomics. 2016 Aug 11;17(1):612. doi: 10.1186/s12864-016-2985-7.


Identification of microRNAs and Their Target Genes Explores miRNA-Mediated Regulatory Network of Cytoplasmic Male Sterility Occurrence during Anther Development in Radish (Raphanus sativus L.).

Zhang W, Xie Y, Xu L, Wang Y, Zhu X, Wang R, Zhang Y, Muleke EM, Liu L.

Front Plant Sci. 2016 Jul 22;7:1054. doi: 10.3389/fpls.2016.01054. eCollection 2016.


Genomic profiling of exogenous abscisic acid-responsive microRNAs in tomato (Solanum lycopersicum).

Cheng HY, Wang Y, Tao X, Fan YF, Dai Y, Yang H, Ma XR.

BMC Genomics. 2016 Jun 3;17:423. doi: 10.1186/s12864-016-2591-8.


Identification and differential expression analysis of MicroRNAs encoded by Tiger Frog Virus in cross-species infection in vitro.

Yuan JM, Chen YS, He J, Weng SP, Guo CJ, He JG.

Virol J. 2016 Apr 30;13:73. doi: 10.1186/s12985-016-0530-6.


circTAIL-seq, a targeted method for deep analysis of RNA 3' tails, reveals transcript-specific differences by multiple metrics.

Gazestani VH, Hampton M, Abrahante JE, Salavati R, Zimmer SL.

RNA. 2016 Mar;22(3):477-86. doi: 10.1261/rna.054494.115. Epub 2016 Jan 12.


Deep sequencing identifies deregulation of microRNAs involved with vincristine drug-resistance of colon cancer cells.

Dong WH, Li Q, Zhang XY, Guo Q, Li H, Wang TY.

Int J Clin Exp Pathol. 2015 Sep 1;8(9):11524-30. eCollection 2015.


Adenylylation of small RNA sequencing adapters using the TS2126 RNA ligase I.

Lama L, Ryan K.

RNA. 2016 Jan;22(1):155-61. doi: 10.1261/rna.054999.115. Epub 2015 Nov 13.


MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum.

An W, Gong W, He S, Pan Z, Sun J, Du X.

BMC Genomics. 2015 Oct 30;16:886. doi: 10.1186/s12864-015-2071-6.


Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice.

Mondal TK, Ganie SA, Debnath AB.

PLoS One. 2015 Oct 27;10(10):e0140675. doi: 10.1371/journal.pone.0140675. eCollection 2015.


Genome-wide identification of microRNAs regulating cholesterol and triglyceride homeostasis.

Wagschal A, Najafi-Shoushtari SH, Wang L, Goedeke L, Sinha S, deLemos AS, Black JC, Ramírez CM, Li Y, Tewhey R, Hatoum I, Shah N, Lu Y, Kristo F, Psychogios N, Vrbanac V, Lu YC, Hla T, de Cabo R, Tsang JS, Schadt E, Sabeti PC, Kathiresan S, Cohen DE, Whetstine J, Chung RT, Fernández-Hernando C, Kaplan LM, Bernards A, Gerszten RE, Näär AM.

Nat Med. 2015 Nov;21(11):1290-7. doi: 10.1038/nm.3980. Epub 2015 Oct 26.


Efficient synthesis of stably adenylated DNA and RNA adapters for microRNA capture using T4 RNA ligase 1.

Song Y, Liu KJ, Wang TH.

Sci Rep. 2015 Oct 26;5:15620. doi: 10.1038/srep15620.


Archaeal Nucleic Acid Ligases and Their Potential in Biotechnology.

Chambers CR, Patrick WM.

Archaea. 2015 Oct 1;2015:170571. doi: 10.1155/2015/170571. eCollection 2015. Review.


MicroRNA of the fifth-instar posterior silk gland of silkworm identified by Solexa sequencing.

Li J, Ye L, Wang S, Che J, You Z, Zhong B.

Genom Data. 2014 Oct 7;2:318-9. doi: 10.1016/j.gdata.2014.09.006. eCollection 2014 Dec.


Combined Small RNA and Degradome Sequencing Reveals Novel MiRNAs and Their Targets in the High-Yield Mutant Wheat Strain Yunong 3114.

Chen F, Zhang X, Zhang N, Wang S, Yin G, Dong Z, Cui D.

PLoS One. 2015 Sep 15;10(9):e0137773. doi: 10.1371/journal.pone.0137773. eCollection 2015.


Cross Platform Standardisation of an Experimental Pipeline for Use in the Identification of Dysregulated Human Circulating MiRNAs.

Kelly H, Downing T, Tuite NL, Smith TJ, Kerin MJ, Dwyer RM, Clancy E, Barry T, Reddington K.

PLoS One. 2015 Sep 10;10(9):e0137389. doi: 10.1371/journal.pone.0137389. eCollection 2015.


High-throughput sequencing and degradome analysis reveal neutral evolution of Cercis gigantea microRNAs and their targets.

Guo W, Zhang Y, Wang Q, Zhan Y, Zhu G, Yu Q, Zhu L.

Planta. 2016 Jan;243(1):83-95. doi: 10.1007/s00425-015-2389-y. Epub 2015 Sep 5.


HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages.

Vongrad V, Imig J, Mohammadi P, Kishore S, Jaskiewicz L, Hall J, Günthard HF, Beerenwinkel N, Metzner KJ.

PLoS One. 2015 Jul 30;10(7):e0132127. doi: 10.1371/journal.pone.0132127. eCollection 2015.


Unique microRNAs appear at different times during the course of a delayed-type hypersensitivity reaction in human skin.

Gulati N, Løvendorf MB, Zibert JR, Akat KM, Renwick N, Tuschl T, Krueger JG.

Exp Dermatol. 2015 Dec;24(12):953-7. doi: 10.1111/exd.12813. Epub 2015 Aug 27.


Identification of miRNAs and Their Targets in Cotton Inoculated with Verticillium dahliae by High-Throughput Sequencing and Degradome Analysis.

Zhang Y, Wang W, Chen J, Liu J, Xia M, Shen F.

Int J Mol Sci. 2015 Jun 30;16(7):14749-68. doi: 10.3390/ijms160714749.

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