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Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.

Taylor JF, Whitacre LK, Hoff JL, Tizioto PC, Kim J, Decker JE, Schnabel RD.

Genet Sel Evol. 2016 Aug 17;48(1):59. doi: 10.1186/s12711-016-0237-6.


The genetics of an early Neolithic pastoralist from the Zagros, Iran.

Gallego-Llorente M, Connell S, Jones ER, Merrett DC, Jeon Y, Eriksson A, Siska V, Gamba C, Meiklejohn C, Beyer R, Jeon S, Cho YS, Hofreiter M, Bhak J, Manica A, Pinhasi R.

Sci Rep. 2016 Aug 9;6:31326. doi: 10.1038/srep31326.


East Eurasian ancestry in the middle of Europe: genetic footprints of Steppe nomads in the genomes of Belarusian Lipka Tatars.

Pankratov V, Litvinov S, Kassian A, Shulhin D, Tchebotarev L, Yunusbayev B, Möls M, Sahakyan H, Yepiskoposyan L, Rootsi S, Metspalu E, Golubenko M, Ekomasova N, Akhatova F, Khusnutdinova E, Heyer E, Endicott P, Derenko M, Malyarchuk B, Metspalu M, Davydenko O, Villems R, Kushniarevich A.

Sci Rep. 2016 Jul 25;6:30197. doi: 10.1038/srep30197.


Breeding signature of combining ability improvement revealed by a genomic variation map from recurrent selection population in Brassica napus.

Zhao X, Li B, Zhang K, Hu K, Yi B, Wen J, Ma C, Shen J, Fu T, Tu J.

Sci Rep. 2016 Jul 14;6:29553. doi: 10.1038/srep29553.


Novel variation at chr11p13 associated with cystic fibrosis lung disease severity.

Dang H, Gallins PJ, Pace RG, Guo XL, Stonebraker JR, Corvol H, Cutting GR, Drumm ML, Strug LJ, Knowles MR, O'Neal WK.

Hum Genome Var. 2016 Jul 7;3:16020. doi: 10.1038/hgv.2016.20. eCollection 2016.


Genome-wide Association Study Identifies Loci for the Polled Phenotype in Yak.

Liang C, Wang L, Wu X, Wang K, Ding X, Wang M, Chu M, Xie X, Qiu Q, Yan P.

PLoS One. 2016 Jul 7;11(7):e0158642. doi: 10.1371/journal.pone.0158642. eCollection 2016.


A microRNA-328 binding site in PAX6 is associated with centrotemporal spikes of rolandic epilepsy.

Panjwani N, Wilson MD, Addis L, Crosbie J, Wirrell E, Auvin S, Caraballo RH, Kinali M, McCormick D, Oren C, Taylor J, Trounce J, Clarke T, Akman CI, Kugler SL, Mandelbaum DE, McGoldrick P, Wolf SM, Arnold P, Schachar R, Pal DK, Strug LJ.

Ann Clin Transl Neurol. 2016 Jun 2;3(7):512-22. doi: 10.1002/acn3.320. eCollection 2016 Jul.


Fine-Mapping of Common Genetic Variants Associated with Colorectal Tumor Risk Identified Potential Functional Variants.

Du M, Jiao S, Bien SA, Gala M, Abecasis G, Bezieau S, Brenner H, Butterbach K, Caan BJ, Carlson CS, Casey G, Chang-Claude J, Conti DV, Curtis KR, Duggan D, Gallinger S, Haile RW, Harrison TA, Hayes RB, Hoffmeister M, Hopper JL, Hudson TJ, Jenkins MA, Küry S, Le Marchand L, Leal SM, Newcomb PA, Nickerson DA, Potter JD, Schoen RE, Schumacher FR, Seminara D, Slattery ML, Hsu L, Chan AT, White E, Berndt SI, Peters U.

PLoS One. 2016 Jul 5;11(7):e0157521. doi: 10.1371/journal.pone.0157521. eCollection 2016.


Rapid genotype imputation from sequence without reference panels.

Davies RW, Flint J, Myers S, Mott R.

Nat Genet. 2016 Aug;48(8):965-9. doi: 10.1038/ng.3594. Epub 2016 Jul 4.


A practical approach to detect ancestral haplotypes in livestock populations.

Sánchez-Molano E, Tsiokos D, Chatziplis D, Jorjani H, Degano L, Diaz C, Rossoni A, Schwarzenbacher H, Seefried F, Varona L, Vicario D, Nicolazzi EL, Banos G.

BMC Genet. 2016 Jun 24;17(1):91. doi: 10.1186/s12863-016-0405-2.


Insights into the genetic variation of maternal behavior and suckling performance of continental beef cows.

Michenet A, Saintilan R, Venot E, Phocas F.

Genet Sel Evol. 2016 Jun 22;48(1):45. doi: 10.1186/s12711-016-0223-z.


Detection of quantitative trait loci for maternal traits using high-density genotypes of Blonde d'Aquitaine beef cattle.

Michenet A, Barbat M, Saintilan R, Venot E, Phocas F.

BMC Genet. 2016 Jun 21;17(1):88. doi: 10.1186/s12863-016-0397-y.


References for Haplotype Imputation in the Big Data Era.

Li W, Xu W, Li Q, Ma L, Song Q.

Mol Biol (Los Angel). 2015 Nov;4(4). pii: 143. Epub 2015 Oct 31.


Genetic variations associated with six-white-point coat pigmentation in Diannan small-ear pigs.

Lü MD, Han XM, Ma YF, Irwin DM, Gao Y, Deng JK, Adeola AC, Xie HB, Zhang YP.

Sci Rep. 2016 Jun 8;6:27534. doi: 10.1038/srep27534.


Fast and accurate long-range phasing in a UK Biobank cohort.

Loh PR, Palamara PF, Price AL.

Nat Genet. 2016 Jul;48(7):811-6. doi: 10.1038/ng.3571. Epub 2016 Jun 6.


CNV analysis in Chinese children of mental retardation highlights a sex differentiation in parental contribution to de novo and inherited mutational burdens.

Wang B, Ji T, Zhou X, Wang J, Wang X, Wang J, Zhu D, Zhang X, Sham PC, Zhang X, Ma X, Jiang Y.

Sci Rep. 2016 Jun 3;6:25954. doi: 10.1038/srep25954.


Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly.

Wragg D, Marti-Marimon M, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Vignal A.

Sci Rep. 2016 Jun 3;6:27168. doi: 10.1038/srep27168.


Contrasting Linguistic and Genetic Origins of the Asian Source Populations of Malagasy.

Kusuma P, Brucato N, Cox MP, Pierron D, Razafindrazaka H, Adelaar A, Sudoyo H, Letellier T, Ricaut FX.

Sci Rep. 2016 May 18;6:26066. doi: 10.1038/srep26066.


Local Ancestry Inference in a Large US-Based Hispanic/Latino Study: Hispanic Community Health Study/Study of Latinos (HCHS/SOL).

Browning SR, Grinde K, Plantinga A, Gogarten SM, Stilp AM, Kaplan RC, Avilés-Santa ML, Browning BL, Laurie CC.

G3 (Bethesda). 2016 Jun 1;6(6):1525-34. doi: 10.1534/g3.116.028779.


Selection signatures in Canchim beef cattle.

Urbinati I, Stafuzza NB, Oliveira MT, Chud TC, Higa RH, Regitano LC, de Alencar MM, Buzanskas ME, Munari DP.

J Anim Sci Biotechnol. 2016 May 5;7:29. doi: 10.1186/s40104-016-0089-5. eCollection 2016.

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