Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 19


The evolution of enzyme function in the isomerases.

Martinez Cuesta S, Furnham N, Rahman SA, Sillitoe I, Thornton JM.

Curr Opin Struct Biol. 2014 Jun;26:121-30. doi: 10.1016/ Epub 2014 Jul 5. Review.


Leveraging structure for enzyme function prediction: methods, opportunities, and challenges.

Jacobson MP, Kalyanaraman C, Zhao S, Tian B.

Trends Biochem Sci. 2014 Aug;39(8):363-71. doi: 10.1016/j.tibs.2014.05.006. Epub 2014 Jul 2. Review.


Profiling the orphan enzymes.

Sorokina M, Stam M, Médigue C, Lespinet O, Vallenet D.

Biol Direct. 2014 Jun 6;9:10. doi: 10.1186/1745-6150-9-10. Review.


Metabolomic strategies for the identification of new enzyme functions and metabolic pathways.

Prosser GA, Larrouy-Maumus G, de Carvalho LP.

EMBO Rep. 2014 Jun;15(6):657-69. doi: 10.15252/embr.201338283. Epub 2014 May 14. Review.


Finding sequences for over 270 orphan enzymes.

Shearer AG, Altman T, Rhee CD.

PLoS One. 2014 May 14;9(5):e97250. doi: 10.1371/journal.pone.0097250. eCollection 2014.


Rapid identification of sequences for orphan enzymes to power accurate protein annotation.

Ramkissoon KR, Miller JK, Ojha S, Watson DS, Bomar MG, Galande AK, Shearer AG.

PLoS One. 2013 Dec 30;8(12):e84508. doi: 10.1371/journal.pone.0084508. eCollection 2013.


The orphan protein bis-γ-glutamylcystine reductase joins the pyridine nucleotide disulfide reductase family.

Kim J, Copley SD.

Biochemistry. 2013 Apr 30;52(17):2905-13. doi: 10.1021/bi4003343. Epub 2013 Apr 19.


A systematic comparison of the MetaCyc and KEGG pathway databases.

Altman T, Travers M, Kothari A, Caspi R, Karp PD.

BMC Bioinformatics. 2013 Mar 27;14:112. doi: 10.1186/1471-2105-14-112.


Linking genome-scale metabolic modeling and genome annotation.

Blais EM, Chavali AK, Papin JA.

Methods Mol Biol. 2013;985:61-83. doi: 10.1007/978-1-62703-299-5_4.


FastAnnotator--an efficient transcript annotation web tool.

Chen TW, Gan RC, Wu TH, Huang PJ, Lee CY, Chen YY, Chen CC, Tang P.

BMC Genomics. 2012;13 Suppl 7:S9. doi: 10.1186/1471-2164-13-S7-S9. Epub 2012 Dec 13.


Secreted protein kinases.

Tagliabracci VS, Pinna LA, Dixon JE.

Trends Biochem Sci. 2013 Mar;38(3):121-30. doi: 10.1016/j.tibs.2012.11.008. Epub 2012 Dec 29. Review.


The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.

Smith AA, Belda E, Viari A, Medigue C, Vallenet D.

PLoS Comput Biol. 2012 May;8(5):e1002540. doi: 10.1371/journal.pcbi.1002540. Epub 2012 May 31.


Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.

Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P.

Mol Syst Biol. 2012 May 8;8:581. doi: 10.1038/msb.2012.13.


From complete genome sequence to 'complete' understanding?

Galperin MY, Koonin EV.

Trends Biotechnol. 2010 Aug;28(8):398-406. doi: 10.1016/j.tibtech.2010.05.006.


Systematizing the generation of missing metabolic knowledge.

Orth JD, Palsson BØ.

Biotechnol Bioeng. 2010 Oct 15;107(3):403-12. doi: 10.1002/bit.22844. Review.


Towards Robot Scientists for autonomous scientific discovery.

Sparkes A, Aubrey W, Byrne E, Clare A, Khan MN, Liakata M, Markham M, Rowland J, Soldatova LN, Whelan KE, Young M, King RD.

Autom Exp. 2010 Jan 4;2:1. doi: 10.1186/1759-4499-2-1.


'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it.

Hanson AD, Pribat A, Waller JC, de Crécy-Lagard V.

Biochem J. 2009 Dec 14;425(1):1-11. doi: 10.1042/BJ20091328. Review.


Reconstruction of biochemical networks in microorganisms.

Feist AM, Herrgård MJ, Thiele I, Reed JL, Palsson BØ.

Nat Rev Microbiol. 2009 Feb;7(2):129-43. doi: 10.1038/nrmicro1949. Epub 2008 Dec 31. Review.

Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk