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Strain-level dissection of the contribution of the gut microbiome to human metabolic disease.

Zhang C, Zhao L.

Genome Med. 2016 Apr 20;8(1):41. doi: 10.1186/s13073-016-0304-1.


Gut Microbiota and Nonalcoholic Fatty Liver Disease: Insights on Mechanism and Application of Metabolomics.

He X, Ji G, Jia W, Li H.

Int J Mol Sci. 2016 Mar 15;17(3):300. doi: 10.3390/ijms17030300. Review.


Helicobacter pylori Eradication Causes Perturbation of the Human Gut Microbiome in Young Adults.

Yap TW, Gan HM, Lee YP, Leow AH, Azmi AN, Francois F, Perez-Perez GI, Loke MF, Goh KL, Vadivelu J.

PLoS One. 2016 Mar 18;11(3):e0151893. doi: 10.1371/journal.pone.0151893. eCollection 2016.


Obesity and Asthma: Microbiome-Metabolome Interactions.

Shore SA, Cho Y.

Am J Respir Cell Mol Biol. 2016 May;54(5):609-17. doi: 10.1165/rcmb.2016-0052PS.


Correlations of Fecal Metabonomic and Microbiomic Changes Induced by High-fat Diet in the Pre-Obesity State.

Lin H, An Y, Hao F, Wang Y, Tang H.

Sci Rep. 2016 Feb 26;6:21618. doi: 10.1038/srep21618.


Obesity, Asthma, and the Microbiome.

Cho Y, Shore SA.

Physiology (Bethesda). 2016 Mar;31(2):108-16. doi: 10.1152/physiol.00045.2015. Review.


Microbiota and bile acid profiles in retinoic acid-primed mice that exhibit accelerated liver regeneration.

Liu HX, Hu Y, Wan YJ.

Oncotarget. 2016 Jan 12;7(2):1096-106. doi: 10.18632/oncotarget.6665.


Metabolite Signatures in Hydrophilic Extracts of Mouse Lungs Exposed to Cigarette Smoke Revealed by 1H NMR Metabolomics Investigation.

Jz H, X W, J F, Bj R, Km W, Sc T, Jg P, Ra C, M L, M H.

Metabolomics (Los Angel). 2015 Jun;5(2). pii: 143. Epub 2015 May 12.


Comparative Evaluation of DNA Extraction Methods from Feces of Multiple Host Species for Downstream Next-Generation Sequencing.

Hart ML, Meyer A, Johnson PJ, Ericsson AC.

PLoS One. 2015 Nov 24;10(11):e0143334. doi: 10.1371/journal.pone.0143334. eCollection 2015.


Functional analysis of the relationship between intestinal microbiota and the expression of hepatic genes and pathways during the course of liver regeneration.

Liu HX, Rocha CS, Dandekar S, Wan YJ.

J Hepatol. 2016 Mar;64(3):641-50. doi: 10.1016/j.jhep.2015.09.022. Epub 2016 Jan 12.


Effects of Oral Administration of Chitin Nanofiber on Plasma Metabolites and Gut Microorganisms.

Azuma K, Izumi R, Kawata M, Nagae T, Osaki T, Murahata Y, Tsuka T, Imagawa T, Ito N, Okamoto Y, Morimoto M, Izawa H, Saimoto H, Ifuku S.

Int J Mol Sci. 2015 Sep 10;16(9):21931-49. doi: 10.3390/ijms160921931.


Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp.

Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR.

ISME J. 2016 Feb;10(2):514-26. doi: 10.1038/ismej.2015.146. Epub 2015 Aug 28. Erratum in: ISME J. 2016 Feb;10(2):532.


Prebiotic effects of diet supplemented with the cultivated red seaweed Chondrus crispus or with fructo-oligo-saccharide on host immunity, colonic microbiota and gut microbial metabolites.

Liu J, Kandasamy S, Zhang J, Kirby CW, Karakach T, Hafting J, Critchley AT, Evans F, Prithiviraj B.

BMC Complement Altern Med. 2015 Aug 14;15:279. doi: 10.1186/s12906-015-0802-5.


Metastatic Melanoma Induced Metabolic Changes in C57BL/6J Mouse Stomach Measured by 1H NMR Spectroscopy.

Wang X, Hu M, Liu M, Hu JZ.

Metabolomics (Los Angel). 2014;4(2). pii: 1000135.


The dormant blood microbiome in chronic, inflammatory diseases.

Potgieter M, Bester J, Kell DB, Pretorius E.

FEMS Microbiol Rev. 2015 Jul;39(4):567-91. doi: 10.1093/femsre/fuv013. Epub 2015 May 3. Review.


Systematic prediction of health-relevant human-microbial co-metabolism through a computational framework.

Heinken A, Thiele I.

Gut Microbes. 2015;6(2):120-30. doi: 10.1080/19490976.2015.1023494.


Nutri(meta)genetics and cardiovascular disease: novel concepts in the interaction of diet and genomic variation.

Joseph J, Loscalzo J.

Curr Atheroscler Rep. 2015 May;17(5):505. doi: 10.1007/s11883-015-0505-x. Review.


The composition of the gut microbiota throughout life, with an emphasis on early life.

Rodríguez JM, Murphy K, Stanton C, Ross RP, Kober OI, Juge N, Avershina E, Rudi K, Narbad A, Jenmalm MC, Marchesi JR, Collado MC.

Microb Ecol Health Dis. 2015 Feb 2;26:26050. doi: 10.3402/mehd.v26.26050. eCollection 2015.


Stool phospholipid signature is altered by diet and tumors.

Davies JM, Hua HU, Dheer R, Martinez M, Bhattacharya SK, Abreu MT.

PLoS One. 2014 Dec 3;9(12):e114352. doi: 10.1371/journal.pone.0114352. eCollection 2014.


A metabolomic and pharmacokinetic study on the mechanism underlying the lipid-lowering effect of orally administered berberine.

Gu S, Cao B, Sun R, Tang Y, Paletta JL, Wu X, Liu L, Zha W, Zhao C, Li Y, Ridlon JM, Hylemon PB, Zhou H, Aa J, Wang G.

Mol Biosyst. 2015 Feb;11(2):463-74. doi: 10.1039/c4mb00500g. Epub 2014 Nov 20. Erratum in: Mol Biosyst. 2015 Feb;11(2):664. Wu, Xiao-Lei [corrected to Wu, Xiaolei]; Radlon, Jason M [corrected to Ridlon, Jason M].

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