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Results: 1 to 20 of 21

1.

The conformational state of the nucleosome entry-exit site modulates TATA box-specific TBP binding.

Hieb AR, Gansen A, Böhm V, Langowski J.

Nucleic Acids Res. 2014;42(12):7561-76. doi: 10.1093/nar/gku423. Epub 2014 May 14.

PMID:
24829456
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Mot1 redistributes TBP from TATA-containing to TATA-less promoters.

Zentner GE, Henikoff S.

Mol Cell Biol. 2013 Dec;33(24):4996-5004. doi: 10.1128/MCB.01218-13. Epub 2013 Oct 21.

PMID:
24144978
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

One small step for Mot1; one giant leap for other Swi2/Snf2 enzymes?

Viswanathan R, Auble DT.

Biochim Biophys Acta. 2011 Sep;1809(9):488-96. doi: 10.1016/j.bbagrm.2011.05.012. Epub 2011 May 30. Review.

PMID:
21658482
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-wide transcriptional dependence on conserved regions of Mot1.

Venters BJ, Irvin JD, Gramlich P, Pugh BF.

Mol Cell Biol. 2011 Jun;31(11):2253-61. doi: 10.1128/MCB.01464-10. Epub 2011 Mar 28.

PMID:
21444714
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Understanding protein evolutionary rate by integrating gene co-expression with protein interactions.

Pang K, Cheng C, Xuan Z, Sheng H, Ma X.

BMC Syst Biol. 2010 Dec 30;4:179. doi: 10.1186/1752-0509-4-179.

PMID:
21190591
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo.

Lahudkar S, Shukla A, Bajwa P, Durairaj G, Stanojevic N, Bhaumik SR.

Nucleic Acids Res. 2011 Mar;39(6):2188-209. doi: 10.1093/nar/gkq1029. Epub 2010 Nov 12.

PMID:
21075799
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Histone H2B ubiquitination and beyond: Regulation of nucleosome stability, chromatin dynamics and the trans-histone H3 methylation.

Chandrasekharan MB, Huang F, Sun ZW.

Epigenetics. 2010 Aug 16;5(6):460-8. doi: 10.4161/epi.5.6.12314. Epub 2010 Aug 16. Review.

PMID:
20523115
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Basal core promoters control the equilibrium between negative cofactor 2 and preinitiation complexes in human cells.

Albert TK, Grote K, Boeing S, Meisterernst M.

Genome Biol. 2010;11(3):R33. doi: 10.1186/gb-2010-11-3-r33. Epub 2010 Mar 15.

PMID:
20230619
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Direct transactivator-transcription factor IID (TFIID) contacts drive yeast ribosomal protein gene transcription.

Layer JH, Miller SG, Weil PA.

J Biol Chem. 2010 May 14;285(20):15489-99. doi: 10.1074/jbc.M110.104810. Epub 2010 Feb 26.

PMID:
20189987
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

GCN5 is a positive regulator of origins of DNA replication in Saccharomyces cerevisiae.

Espinosa MC, Rehman MA, Chisamore-Robert P, Jeffery D, Yankulov K.

PLoS One. 2010 Jan 29;5(1):e8964. doi: 10.1371/journal.pone.0008964.

PMID:
20126453
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.

Ohtsuki K, Kasahara K, Shirahige K, Kokubo T.

Nucleic Acids Res. 2010 Apr;38(6):1805-20. doi: 10.1093/nar/gkp1172. Epub 2009 Dec 21.

PMID:
20026583
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Regulon-specific control of transcription elongation across the yeast genome.

Pelechano V, Jimeno-González S, Rodríguez-Gil A, García-Martínez J, Pérez-Ortín JE, Chávez S.

PLoS Genet. 2009 Aug;5(8):e1000614. doi: 10.1371/journal.pgen.1000614. Epub 2009 Aug 21.

PMID:
19696888
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Core and periphery structures in protein interaction networks.

Luo F, Li B, Wan XF, Scheuermann RH.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S8. doi: 10.1186/1471-2105-10-S4-S8.

PMID:
19426456
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The basal initiation machinery: beyond the general transcription factors.

Sikorski TW, Buratowski S.

Curr Opin Cell Biol. 2009 Jun;21(3):344-51. doi: 10.1016/j.ceb.2009.03.006. Epub 2009 May 4. Review.

PMID:
19411170
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Protein aggregation and polyasparagine-mediated cellular toxicity in Saccharomyces cerevisiae.

Peters TW, Huang M.

Prion. 2007 Apr-Jun;1(2):144-53. Epub 2007 Apr 26.

PMID:
19164913
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

TFIIB recognition elements control the TFIIA-NC2 axis in transcriptional regulation.

Deng W, Malecová B, Oelgeschläger T, Roberts SG.

Mol Cell Biol. 2009 Mar;29(6):1389-400. doi: 10.1128/MCB.01346-08. Epub 2008 Dec 29.

PMID:
19114554
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

TATA-binding protein variants that bypass the requirement for Mot1 in vivo.

Sprouse RO, Wells MN, Auble DT.

J Biol Chem. 2009 Feb 13;284(7):4525-35. doi: 10.1074/jbc.M808951200. Epub 2008 Dec 21.

PMID:
19098311
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The dynamic personality of TATA-binding protein.

Auble DT.

Trends Biochem Sci. 2009 Feb;34(2):49-52. doi: 10.1016/j.tibs.2008.10.008. Epub 2008 Nov 27.

PMID:
19038550
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Computational modelling of genome-wide [corrected] transcription assembly networks using a fluidics analogy.

Azmy YY, Gupta A, Pugh BF.

PLoS One. 2008 Aug 28;3(8):e3095. doi: 10.1371/journal.pone.0003095. Erratum in: PLoS ONE. 2008;3(9). doi: 10.1371/annotation/aadfff4b-6947-475c-8121-225ba113adf8.

PMID:
18769485
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The transcriptional repressor activator protein Rap1p is a direct regulator of TATA-binding protein.

Bendjennat M, Weil PA.

J Biol Chem. 2008 Mar 28;283(13):8699-710. doi: 10.1074/jbc.M709436200. Epub 2008 Jan 14.

PMID:
18195009
[PubMed - indexed for MEDLINE]
Free PMC Article

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