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Items: 17


Model based engineering of Pichia pastoris central metabolism enhances recombinant protein production.

Nocon J, Steiger MG, Pfeffer M, Sohn SB, Kim TY, Maurer M, Rußmayer H, Pflügl S, Ask M, Haberhauer-Troyer C, Ortmayr K, Hann S, Koellensperger G, Gasser B, Lee SY, Mattanovich D.

Metab Eng. 2014 Jul;24:129-38. doi: 10.1016/j.ymben.2014.05.011. Epub 2014 May 20.


Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling.

Borgos SE, Bordel S, Sletta H, Ertesvåg H, Jakobsen Ø, Bruheim P, Ellingsen TE, Nielsen J, Valla S.

BMC Syst Biol. 2013 Mar 11;7:19. doi: 10.1186/1752-0509-7-19.


MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases.

Kumar A, Suthers PF, Maranas CD.

BMC Bioinformatics. 2012 Jan 10;13:6. doi: 10.1186/1471-2105-13-6.


Succinate production in Escherichia coli.

Thakker C, Martínez I, San KY, Bennett GN.

Biotechnol J. 2012 Feb;7(2):213-24. doi: 10.1002/biot.201100061. Epub 2011 Sep 20. Review.


A survey of metabolic databases emphasizing the MetaCyc family.

Karp PD, Caspi R.

Arch Toxicol. 2011 Sep;85(9):1015-33. doi: 10.1007/s00204-011-0705-2. Epub 2011 Apr 27. Review.


Unpublished but public microbial genomes with biotechnological relevance.

Siezen RJ, Wilson G.

Microb Biotechnol. 2008 May;1(3):202-7. doi: 10.1111/j.1751-7915.2008.00034.x. No abstract available.


Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery.

Kim HU, Kim SY, Jeong H, Kim TY, Kim JJ, Choy HE, Yi KY, Rhee JH, Lee SY.

Mol Syst Biol. 2011 Jan 18;7:460. doi: 10.1038/msb.2010.115.


Cre-lox-based method for generation of large deletions within the genomic magnetosome island of Magnetospirillum gryphiswaldense.

Ullrich S, Schüler D.

Appl Environ Microbiol. 2010 Apr;76(8):2439-44. doi: 10.1128/AEM.02805-09. Epub 2010 Feb 19.


Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology.

Milne CB, Kim PJ, Eddy JA, Price ND.

Biotechnol J. 2009 Dec;4(12):1653-70. doi: 10.1002/biot.200900234. Review.


Metabolic evolution of energy-conserving pathways for succinate production in Escherichia coli.

Zhang X, Jantama K, Moore JC, Jarboe LR, Shanmugam KT, Ingram LO.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20180-5. doi: 10.1073/pnas.0905396106. Epub 2009 Nov 16.


Applications of genome-scale metabolic reconstructions.

Oberhardt MA, Palsson BØ, Papin JA.

Mol Syst Biol. 2009;5:320. doi: 10.1038/msb.2009.77. Epub 2009 Nov 3. Review.


The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875. Epub 2009 Oct 22.


Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes.

Kastenmüller G, Schenk ME, Gasteiger J, Mewes HW.

Genome Biol. 2009;10(3):R28. doi: 10.1186/gb-2009-10-3-r28. Epub 2009 Mar 10.


Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major.

Chavali AK, Whittemore JD, Eddy JA, Williams KT, Papin JA.

Mol Syst Biol. 2008;4:177. doi: 10.1038/msb.2008.15. Epub 2008 Mar 25.


Metabolome based reaction graphs of M. tuberculosis and M. leprae: a comparative network analysis.

Verkhedkar KD, Raman K, Chandra NR, Vishveshwara S.

PLoS One. 2007 Sep 12;2(9):e881.

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