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Results: 15

1.

Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities.

Jay ZJ, Rusch DB, Tringe SG, Bailey C, Jennings RM, Inskeep WP.

Appl Environ Microbiol. 2014 Jan;80(1):294-305. doi: 10.1128/AEM.02860-13. Epub 2013 Oct 25.

PMID:
24162572
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Variation of the virus-related elements within syntenic genomes of the hyperthermophilic Archaeon Aeropyrum.

Daifuku T, Yoshida T, Kitamura T, Kawaichi S, Inoue T, Nomura K, Yoshida Y, Kuno S, Sako Y.

Appl Environ Microbiol. 2013 Oct;79(19):5891-8. doi: 10.1128/AEM.01089-13. Epub 2013 Jul 19.

PMID:
23872576
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2.

Kenchappa CS, Heidarsson PO, Kragelund BB, Garrett RA, Poulsen FM.

Nucleic Acids Res. 2013 Mar 1;41(5):3424-35. doi: 10.1093/nar/gks1465. Epub 2013 Jan 15.

PMID:
23325851
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus.

Deng L, Kenchappa CS, Peng X, She Q, Garrett RA.

Nucleic Acids Res. 2012 Mar;40(6):2470-80. doi: 10.1093/nar/gkr1111. Epub 2011 Dec 1.

PMID:
22139923
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A).

Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Huber H, Yasawong M, Rohde M, Spring S, Abt B, Sikorski J, Wirth R, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A.

Stand Genomic Sci. 2011 Jul 1;4(3):381-92. doi: 10.4056/sigs.2014648.

PMID:
21886865
[PubMed]
Free PMC Article
6.

Crenarchaeal CdvA forms double-helical filaments containing DNA and interacts with ESCRT-III-like CdvB.

Moriscot C, Gribaldo S, Jault JM, Krupovic M, Arnaud J, Jamin M, Schoehn G, Forterre P, Weissenhorn W, Renesto P.

PLoS One. 2011;6(7):e21921. doi: 10.1371/journal.pone.0021921. Epub 2011 Jul 8.

PMID:
21760923
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Complete genome sequence of Desulfurococcus mucosus type strain (O7/1).

Wirth R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ioanna P, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Bilek Y, Hader T, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2011 Apr 29;4(2):173-82. doi: 10.4056/sigs.1644004.

PMID:
21677854
[PubMed]
Free PMC Article
8.

Complete genome sequence of Vulcanisaeta distributa type strain (IC-017).

Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, Nolan M, Glavina Del Rio T, Cheng JF, Bruce D, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Göker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.

Stand Genomic Sci. 2010 Sep 28;3(2):117-25. doi: 10.4056/sigs.1113067.

PMID:
21304741
[PubMed]
Free PMC Article
9.

Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1).

Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Tapia R, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Brambilla E, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Detter JC, Han C, Rohde M, Sikorski J, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2010 Aug 20;3(1):66-75. doi: 10.4056/sigs.1072907.

PMID:
21304693
[PubMed]
Free PMC Article
10.

Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.

Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, Richardson TH, Macur RE, Hamamura N, Jennings Rd, Fouke BW, Reysenbach AL, Roberto F, Young M, Schwartz A, Boyd ES, Badger JH, Mathur EJ, Ortmann AC, Bateson M, Geesey G, Frazier M.

PLoS One. 2010 Mar 19;5(3):e9773. doi: 10.1371/journal.pone.0009773.

PMID:
20333304
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene.

Yokobori S, Itoh T, Yoshinari S, Nomura N, Sako Y, Yamagishi A, Oshima T, Kita K, Watanabe Y.

BMC Evol Biol. 2009 Aug 11;9:198. doi: 10.1186/1471-2148-9-198.

PMID:
19671140
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota.

Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M, Lapidus A, Lucas S, Barry K, Huber H, Zhulin IB, Whitman WB, Mukhopadhyay B, Woese C, Bristow J, Kyrpides N.

BMC Genomics. 2009 Apr 2;10:145. doi: 10.1186/1471-2164-10-145.

PMID:
19341479
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans.

Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, Fernandes F, Szeto E, Lapidus A, Kyrpides NC, Saier MH Jr, Richardson PM, Rachel R, Huber H, Eisen JA, Koonin EV, Keller M, Stetter KO.

Genome Biol. 2008;9(11):R158. doi: 10.1186/gb-2008-9-11-r158. Epub 2008 Nov 10.

PMID:
19000309
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.

PMID:
18042280
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Extrachromosomal element capture and the evolution of multiple replication origins in archaeal chromosomes.

Robinson NP, Bell SD.

Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5806-11. Epub 2007 Mar 28.

PMID:
17392430
[PubMed - indexed for MEDLINE]
Free PMC Article

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