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Results: 1 to 20 of 36

Cited In for PubMed (Select 17325681)

1.

The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.

Lardenois A, Stuparevic I, Liu Y, Law MJ, Becker E, Smagulova F, Waern K, Guilleux MH, Horecka J, Chu A, Kervarrec C, Strich R, Snyder M, Davis RW, Steinmetz LM, Primig M.

Nucleic Acids Res. 2015 Jan;43(1):115-28. doi: 10.1093/nar/gku1185. Epub 2014 Dec 3.

2.

Spatial localization of co-regulated genes exceeds genomic gene clustering in the Saccharomyces cerevisiae genome.

Ben-Elazar S, Yakhini Z, Yanai I.

Nucleic Acids Res. 2013 Feb 1;41(4):2191-201. doi: 10.1093/nar/gks1360. Epub 2013 Jan 8.

3.

Characterization of Chromatin Structure-associated Histone Modifications in Breast Cancer Cells.

Hong CP, Choe MK, Roh TY.

Genomics Inform. 2012 Sep;10(3):145-52. doi: 10.5808/GI.2012.10.3.145. Epub 2012 Sep 28.

4.

DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes.

Charoensawan V, Janga SC, Bulyk ML, Babu MM, Teichmann SA.

Mol Cell. 2012 Jul 27;47(2):183-92. doi: 10.1016/j.molcel.2012.06.028.

5.

Balancing noise and plasticity in eukaryotic gene expression.

Bajić D, Poyatos JF.

BMC Genomics. 2012 Jul 27;13:343. doi: 10.1186/1471-2164-13-343.

6.

Histone modification pattern evolution after yeast gene duplication.

Zou Y, Su Z, Huang W, Gu X.

BMC Evol Biol. 2012 Jul 9;12:111. doi: 10.1186/1471-2148-12-111.

7.

Mcm2 phosphorylation and the response to replicative stress.

Stead BE, Brandl CJ, Sandre MK, Davey MJ.

BMC Genet. 2012 May 7;13:36. doi: 10.1186/1471-2156-13-36.

8.

Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors.

Cheng C, Shou C, Yip KY, Gerstein MB.

Genome Biol. 2011 Nov 7;12(11):R111. doi: 10.1186/gb-2011-12-11-r111.

9.

Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast.

Ansari SA, Ganapathi M, Benschop JJ, Holstege FC, Wade JT, Morse RH.

EMBO J. 2012 Jan 4;31(1):44-57. doi: 10.1038/emboj.2011.362. Epub 2011 Oct 4.

10.

A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.

Zaugg JB, Luscombe NM.

Genome Res. 2012 Jan;22(1):84-94. doi: 10.1101/gr.124099.111. Epub 2011 Sep 19.

11.

Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast.

Dai Z, Dai X.

Nucleic Acids Res. 2012 Jan;40(1):27-36. doi: 10.1093/nar/gkr689. Epub 2011 Aug 31.

12.

The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae.

Hanlon SE, Rizzo JM, Tatomer DC, Lieb JD, Buck MJ.

PLoS One. 2011 Apr 28;6(4):e19060. doi: 10.1371/journal.pone.0019060.

13.

Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis.

Everett LJ, Jensen ST, Hannenhalli S.

Nucleic Acids Res. 2011 Jul;39(12):e78. doi: 10.1093/nar/gkr172. Epub 2011 Apr 5.

14.

Coordinated histone modifications are associated with gene expression variation within and between species.

Ha M, Ng DW, Li WH, Chen ZJ.

Genome Res. 2011 Apr;21(4):590-8. doi: 10.1101/gr.116467.110. Epub 2011 Feb 4.

15.

Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes.

Woo YH, Li WH.

Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3306-11. doi: 10.1073/pnas.1100210108. Epub 2011 Feb 7.

16.

Identifying the combinatorial effects of histone modifications by association rule mining in yeast.

Wang J, Dai X, Xiang Q, Deng Y, Feng J, Dai Z, He C.

Evol Bioinform Online. 2010 Sep 20;6:113-31.

17.

Evidences for increased expression variation of duplicate genes in budding yeast: from cis- to trans-regulation effects.

Dong D, Yuan Z, Zhang Z.

Nucleic Acids Res. 2011 Feb;39(3):837-47. doi: 10.1093/nar/gkq874. Epub 2010 Oct 8.

18.

Identifying the genetic determinants of transcription factor activity.

Lee E, Bussemaker HJ.

Mol Syst Biol. 2010 Sep 21;6:412. doi: 10.1038/msb.2010.64.

19.

Gene expression variations are predictive for stochastic noise.

Dong D, Shao X, Deng N, Zhang Z.

Nucleic Acids Res. 2011 Jan;39(2):403-13. doi: 10.1093/nar/gkq844. Epub 2010 Sep 21.

20.

New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome.

Feng J, Dai X, Xiang Q, Dai Z, Wang J, Deng Y, He C.

BMC Genomics. 2010 Jan 15;11:33. doi: 10.1186/1471-2164-11-33.

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