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Results: 19

Cited In for PubMed (Select 16965179)

1.

An autonomously replicating sequence for use in a wide range of budding yeasts.

Liachko I, Dunham MJ.

FEMS Yeast Res. 2014 Mar;14(2):364-7. doi: 10.1111/1567-1364.12123. Epub 2013 Dec 2.

2.

A Link between ORC-origin binding mechanisms and origin activation time revealed in budding yeast.

Hoggard T, Shor E, Müller CA, Nieduszynski CA, Fox CA.

PLoS Genet. 2013;9(9):e1003798. doi: 10.1371/journal.pgen.1003798. Epub 2013 Sep 12.

3.

High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast.

Liachko I, Youngblood RA, Keich U, Dunham MJ.

Genome Res. 2013 Apr;23(4):698-704. doi: 10.1101/gr.144659.112. Epub 2012 Dec 12.

4.

Novel features of ARS selection in budding yeast Lachancea kluyveri.

Liachko I, Tanaka E, Cox K, Chung SC, Yang L, Seher A, Hallas L, Cha E, Kang G, Pace H, Barrow J, Inada M, Tye BK, Keich U.

BMC Genomics. 2011 Dec 28;12:633. doi: 10.1186/1471-2164-12-633.

5.

Initiation of DNA replication: functional and evolutionary aspects.

Bryant JA, Aves SJ.

Ann Bot. 2011 May;107(7):1119-26. doi: 10.1093/aob/mcr075. Epub 2011 Apr 20. Review.

6.

Nuclear mitochondrial DNA activates replication in Saccharomyces cerevisiae.

Chatre L, Ricchetti M.

PLoS One. 2011 Mar 8;6(3):e17235. doi: 10.1371/journal.pone.0017235.

7.

Relicensing of transcriptionally inactivated replication origins in budding yeast.

Lõoke M, Reimand J, Sedman T, Sedman J, Järvinen L, Värv S, Peil K, Kristjuhan K, Vilo J, Kristjuhan A.

J Biol Chem. 2010 Dec 17;285(51):40004-11. doi: 10.1074/jbc.M110.148924. Epub 2010 Oct 20.

8.

The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.

Müller P, Park S, Shor E, Huebert DJ, Warren CL, Ansari AZ, Weinreich M, Eaton ML, MacAlpine DM, Fox CA.

Genes Dev. 2010 Jul 1;24(13):1418-33. doi: 10.1101/gad.1906410.

9.

A comprehensive genome-wide map of autonomously replicating sequences in a naive genome.

Liachko I, Bhaskar A, Lee C, Chung SC, Tye BK, Keich U.

PLoS Genet. 2010 May 13;6(5):e1000946. doi: 10.1371/journal.pgen.1000946.

10.

Mathematical modelling of whole chromosome replication.

de Moura AP, Retkute R, Hawkins M, Nieduszynski CA.

Nucleic Acids Res. 2010 Sep;38(17):5623-33. doi: 10.1093/nar/gkq343. Epub 2010 May 10.

11.

The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication.

Shor E, Warren CL, Tietjen J, Hou Z, Müller U, Alborelli I, Gohard FH, Yemm AI, Borisov L, Broach JR, Weinreich M, Nieduszynski CA, Ansari AZ, Fox CA.

PLoS Genet. 2009 Dec;5(12):e1000755. doi: 10.1371/journal.pgen.1000755. Epub 2009 Dec 4.

12.

Alternative mechanisms for coordinating polymerase alpha and MCM helicase.

Lee C, Liachko I, Bouten R, Kelman Z, Tye BK.

Mol Cell Biol. 2010 Jan;30(2):423-35. doi: 10.1128/MCB.01240-09. Epub 2009 Nov 16.

13.

Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression.

Omberg L, Meyerson JR, Kobayashi K, Drury LS, Diffley JF, Alter O.

Mol Syst Biol. 2009;5:312. doi: 10.1038/msb.2009.70. Epub 2009 Oct 13.

14.

A model for the spatiotemporal organization of DNA replication in Saccharomyces cerevisiae.

Spiesser TW, Klipp E, Barberis M.

Mol Genet Genomics. 2009 Jul;282(1):25-35. doi: 10.1007/s00438-009-0443-9. Epub 2009 Mar 22.

15.

Mcm10 mediates the interaction between DNA replication and silencing machineries.

Liachko I, Tye BK.

Genetics. 2009 Feb;181(2):379-91. doi: 10.1534/genetics.108.099101. Epub 2008 Dec 8.

16.

Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast.

Keich U, Gao H, Garretson JS, Bhaskar A, Liachko I, Donato J, Tye BK.

BMC Bioinformatics. 2008 Sep 12;9:372. doi: 10.1186/1471-2105-9-372.

17.

A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies.

Omberg L, Golub GH, Alter O.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18371-6. Epub 2007 Nov 14.

18.

Genetic and physical mapping of DNA replication origins in Haloferax volcanii.

Norais C, Hawkins M, Hartman AL, Eisen JA, Myllykallio H, Allers T.

PLoS Genet. 2007 May 18;3(5):e77. Epub 2007 Apr 5.

19.

Discovery of principles of nature from mathematical modeling of DNA microarray data.

Alter O.

Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16063-4. Epub 2006 Oct 23. No abstract available.

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