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Results: 9

Cited In for PubMed (Select 16925839)


ASPic-GeneID: a lightweight pipeline for gene prediction and alternative isoforms detection.

Alioto T, Picardi E, Guigó R, Pesole G.

Biomed Res Int. 2013;2013:502827. doi: 10.1155/2013/502827. Epub 2013 Nov 7.


Hidden Markov Models and their Applications in Biological Sequence Analysis.

Yoon BJ.

Curr Genomics. 2009 Sep;10(6):402-15. doi: 10.2174/138920209789177575.


EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.

Picardi E, Mignone F, Pesole G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S10. doi: 10.1186/1471-2105-10-S6-S10.


Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner.

Lu DV, Brown RH, Arumugam M, Brent MR.

Bioinformatics. 2009 Jul 1;25(13):1587-93. doi: 10.1093/bioinformatics/btp273. Epub 2009 May 4.


Targeted discovery of novel human exons by comparative genomics.

Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S, Lau C, Yu HC, Li J, Roe BA, Green P, Gerhard DS, Temple G, Haussler D, Brent MR.

Genome Res. 2007 Dec;17(12):1763-73. Epub 2007 Nov 7.


Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.

Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.


EGASP: the human ENCODE Genome Annotation Assessment Project.

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.


Using ESTs to improve the accuracy of de novo gene prediction.

Wei C, Brent MR.

BMC Bioinformatics. 2006 Jul 3;7:327.

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