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Items: 1 to 20 of 151


Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models.

Hall JB, Cooke Bailey JN, Hoffman JD, Pericak-Vance MA, Scott WK, Kovach JL, Schwartz SG, Agarwal A, Brantley MA Jr, Haines JL, Bush WS.

BMC Bioinformatics. 2015 Oct 14;16:329. doi: 10.1186/s12859-015-0760-4.


Generation of a synthetic GlcNAcylated nucleosome reveals regulation of stability by H2A-Thr101 GlcNAcylation.

Lercher L, Raj R, Patel NA, Price J, Mohammed S, Robinson CV, Schofield CJ, Davis BG.

Nat Commun. 2015 Aug 25;6:7978. doi: 10.1038/ncomms8978.


Tandem repeat variation in human and great ape populations and its impact on gene expression divergence.

Bilgin Sonay T, Carvalho T, Robinson MD, Greminger MP, Krützen M, Comas D, Highnam G, Mittelman D, Sharp A, Marques-Bonet T, Wagner A.

Genome Res. 2015 Nov;25(11):1591-9. doi: 10.1101/gr.190868.115. Epub 2015 Aug 19.


DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.

Wilken MS, Brzezinski JA, La Torre A, Siebenthall K, Thurman R, Sabo P, Sandstrom RS, Vierstra J, Canfield TK, Hansen RS, Bender MA, Stamatoyannopoulos J, Reh TA.

Epigenetics Chromatin. 2015 Feb 28;8:8. doi: 10.1186/1756-8935-8-8. eCollection 2015.


High resolution mapping of enhancer-promoter interactions.

Reeder C, Closser M, Poh HM, Sandhu K, Wichterle H, Gifford D.

PLoS One. 2015 May 13;10(5):e0122420. doi: 10.1371/journal.pone.0122420. eCollection 2015.


Pain-related stress during the Neonatal Intensive Care Unit stay and SLC6A4 methylation in very preterm infants.

Provenzi L, Fumagalli M, Sirgiovanni I, Giorda R, Pozzoli U, Morandi F, Beri S, Menozzi G, Mosca F, Borgatti R, Montirosso R.

Front Behav Neurosci. 2015 Apr 21;9:99. doi: 10.3389/fnbeh.2015.00099. eCollection 2015.


Survey of protein-DNA interactions in Aspergillus oryzae on a genomic scale.

Wang C, Lv Y, Wang B, Yin C, Lin Y, Pan L.

Nucleic Acids Res. 2015 May 19;43(9):4429-46. doi: 10.1093/nar/gkv334. Epub 2015 Apr 16.


3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes.

Babaei S, Akhtar W, de Jong J, Reinders M, de Ridder J.

Nat Commun. 2015 Feb 27;6:6381. doi: 10.1038/ncomms7381.


Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing.

Stavreva DA, Coulon A, Baek S, Sung MH, John S, Stixova L, Tesikova M, Hakim O, Miranda T, Hawkins M, Stamatoyannopoulos JA, Chow CC, Hager GL.

Genome Res. 2015 Jun;25(6):845-57. doi: 10.1101/gr.184168.114. Epub 2015 Feb 12.


Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation.

Wan J, Oliver VF, Wang G, Zhu H, Zack DJ, Merbs SL, Qian J.

BMC Genomics. 2015 Feb 5;16:49. doi: 10.1186/s12864-015-1271-4.


Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo.

Chen PB, Zhu LJ, Hainer SJ, McCannell KN, Fazzio TG.

BMC Genomics. 2014 Dec 15;15:1104. doi: 10.1186/1471-2164-15-1104.


Chromatin accessibility: a window into the genome.

Tsompana M, Buck MJ.

Epigenetics Chromatin. 2014 Nov 20;7(1):33. doi: 10.1186/1756-8935-7-33. eCollection 2014. Review.


Estrogen induces global reorganization of chromatin structure in human breast cancer cells.

Mourad R, Hsu PY, Juan L, Shen C, Koneru P, Lin H, Liu Y, Nephew K, Huang TH, Li L.

PLoS One. 2014 Dec 3;9(12):e113354. doi: 10.1371/journal.pone.0113354. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0118237.


SuRFing the genomics wave: an R package for prioritising SNPs by functionality.

Ryan NM, Morris SW, Porteous DJ, Taylor MS, Evans KL.

Genome Med. 2014 Oct 14;6(10):79. doi: 10.1186/s13073-014-0079-1. eCollection 2014.


Multiple functional risk variants in a SMAD7 enhancer implicate a colorectal cancer risk haplotype.

Fortini BK, Tring S, Plummer SJ, Edlund CK, Moreno V, Bresalier RS, Barry EL, Church TR, Figueiredo JC, Casey G.

PLoS One. 2014 Nov 6;9(11):e111914. doi: 10.1371/journal.pone.0111914. eCollection 2014.


Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet.

Collier SP, Henderson MA, Tossberg JT, Aune TM.

J Immunol. 2014 Oct 15;193(8):3959-65. doi: 10.4049/jimmunol.1401099. Epub 2014 Sep 15.


Active enhancers are delineated de novo during hematopoiesis, with limited lineage fidelity among specified primary blood cells.

Luyten A, Zang C, Liu XS, Shivdasani RA.

Genes Dev. 2014 Aug 15;28(16):1827-39. doi: 10.1101/gad.240101.114.


Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.

Sabò A, Kress TR, Pelizzola M, de Pretis S, Gorski MM, Tesi A, Morelli MJ, Bora P, Doni M, Verrecchia A, Tonelli C, Fagà G, Bianchi V, Ronchi A, Low D, Müller H, Guccione E, Campaner S, Amati B.

Nature. 2014 Jul 24;511(7510):488-92. doi: 10.1038/nature13537. Epub 2014 Jul 9.


Functional annotation signatures of disease susceptibility loci improve SNP association analysis.

Iversen ES, Lipton G, Clyde MA, Monteiro AN.

BMC Genomics. 2014 May 24;15:398. doi: 10.1186/1471-2164-15-398.


Development and antitumor activity of a BCL-2 targeted single-stranded DNA oligonucleotide.

Rodrigueza WV, Woolliscroft MJ, Ebrahim AS, Forgey R, McGovren PJ, Endert G, Wagner A, Holewa D, Aboukameel A, Gill RD, Bisgaier CL, Messmann RA, Whitehead CE, Izbicka E, Streeper R, Wick MC, Stiegler G, Stein CA, Monsma D, Webb C, Sooch MP, Panzner S, Mohammad R, Goodwin NC, Al-Katib A.

Cancer Chemother Pharmacol. 2014 Jul;74(1):151-66. doi: 10.1007/s00280-014-2476-y. Epub 2014 May 16.

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