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Results: 1 to 20 of 75

1.

Viral RNAs Are Unusually Compact.

Gopal A, Egecioglu DE, Yoffe AM, Ben-Shaul A, Rao AL, Knobler CM, Gelbart WM.

PLoS One. 2014 Sep 4;9(9):e105875. doi: 10.1371/journal.pone.0105875. eCollection 2014.

PMID:
25188030
[PubMed - in process]
Free PMC Article
2.

Characteristics and prediction of RNA structure.

Li H, Zhu D, Zhang C, Han H, Crandall KA.

Biomed Res Int. 2014;2014:690340. doi: 10.1155/2014/690340. Epub 2014 Jul 6.

PMID:
25110687
[PubMed - in process]
Free PMC Article
3.

Prediction and classification of ncRNAs using structural information.

Panwar B, Arora A, Raghava GP.

BMC Genomics. 2014 Feb 13;15:127. doi: 10.1186/1471-2164-15-127.

PMID:
24521294
[PubMed - in process]
Free PMC Article
4.

Computational approaches in detecting non- coding RNA.

Wang C, Wei L, Guo M, Zou Q.

Curr Genomics. 2013 Sep;14(6):371-7. doi: 10.2174/13892029113149990005.

PMID:
24396270
[PubMed]
Free PMC Article
5.

The centrality of RNA for engineering gene expression.

Chappell J, Takahashi MK, Meyer S, Loughrey D, Watters KE, Lucks J.

Biotechnol J. 2013 Dec;8(12):1379-95. doi: 10.1002/biot.201300018. Epub 2013 Oct 4. Review.

PMID:
24124015
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Programmable folding of fusion RNA in vivo and in vitro driven by pRNA 3WJ motif of phi29 DNA packaging motor.

Shu D, Khisamutdinov EF, Zhang L, Guo P.

Nucleic Acids Res. 2014 Jan;42(2):e10. doi: 10.1093/nar/gkt885. Epub 2013 Sep 30.

PMID:
24084081
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Classification and assessment tools for structural motif discovery algorithms.

Badr G, Al-Turaiki I, Mathkour H.

BMC Bioinformatics. 2013;14 Suppl 9:S4. doi: 10.1186/1471-2105-14-S9-S4. Epub 2013 Jun 28.

PMID:
23902564
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns.

Meyer F, Kurtz S, Beckstette M.

BMC Bioinformatics. 2013 Jul 17;14:226. doi: 10.1186/1471-2105-14-226.

PMID:
23865810
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Long-range architecture in a viral RNA genome.

Archer EJ, Simpson MA, Watts NJ, O'Kane R, Wang B, Erie DA, McPherson A, Weeks KM.

Biochemistry. 2013 May 7;52(18):3182-90. doi: 10.1021/bi4001535. Epub 2013 Apr 25.

PMID:
23614526
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.

Sükösd Z, Swenson MS, Kjems J, Heitsch CE.

Nucleic Acids Res. 2013 Mar 1;41(5):2807-16. doi: 10.1093/nar/gks1283. Epub 2013 Jan 15.

PMID:
23325843
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Statistical analysis of SHAPE-directed RNA secondary structure modeling.

Ramachandran S, Ding F, Weeks KM, Dokholyan NV.

Biochemistry. 2013 Jan 29;52(4):596-9. doi: 10.1021/bi300756s. Epub 2013 Jan 14.

PMID:
23286327
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Coarse-grained prediction of RNA loop structures.

Liu L, Chen SJ.

PLoS One. 2012;7(11):e48460. doi: 10.1371/journal.pone.0048460. Epub 2012 Nov 8.

PMID:
23144887
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An RNA Mapping DataBase for curating RNA structure mapping experiments.

Cordero P, Lucks JB, Das R.

Bioinformatics. 2012 Nov 15;28(22):3006-8. doi: 10.1093/bioinformatics/bts554. Epub 2012 Sep 12.

PMID:
22976082
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology.

Guo P, Haque F, Hallahan B, Reif R, Li H.

Nucleic Acid Ther. 2012 Aug;22(4):226-45. doi: 10.1089/nat.2012.0350. Review.

PMID:
22913595
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Viroids: from genotype to phenotype just relying on RNA sequence and structural motifs.

Flores R, Serra P, Minoia S, Di Serio F, Navarro B.

Front Microbiol. 2012 Jun 18;3:217. doi: 10.3389/fmicb.2012.00217. eCollection 2012.

PMID:
22719735
[PubMed]
Free PMC Article
16.

Automated 3D structure composition for large RNAs.

Popenda M, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW.

Nucleic Acids Res. 2012 Aug;40(14):e112. doi: 10.1093/nar/gks339. Epub 2012 Apr 26.

PMID:
22539264
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts.

Bahrami A, Clos LJ 2nd, Markley JL, Butcher SE, Eghbalnia HR.

J Biomol NMR. 2012 Apr;52(4):289-302. doi: 10.1007/s10858-012-9603-z. Epub 2012 Feb 23.

PMID:
22359049
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Entropic origin of Mg2+-facilitated RNA folding.

Fiore JL, Holmstrom ED, Nesbitt DJ.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2902-7. doi: 10.1073/pnas.1114859109. Epub 2012 Feb 1.

PMID:
22308376
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.

Seetin MG, Mathews DH.

Bioinformatics. 2012 Mar 15;28(6):792-8. doi: 10.1093/bioinformatics/bts044. Epub 2012 Jan 27.

PMID:
22285566
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Sequence-structure relationships in yeast mRNAs.

Chursov A, Walter MC, Schmidt T, Mironov A, Shneider A, Frishman D.

Nucleic Acids Res. 2012 Feb;40(3):956-62. doi: 10.1093/nar/gkr790. Epub 2011 Sep 27.

PMID:
21954438
[PubMed - indexed for MEDLINE]
Free PMC Article

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