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Results: 1 to 20 of 144

1.

PHF8 and REST/NRSF co-occupy gene promoters to regulate proximal gene expression.

Wang J, Lin X, Wang S, Wang C, Wang Q, Duan X, Lu P, Wang Q, Wang C, Liu XS, Huang J.

Sci Rep. 2014 May 23;4:5008. doi: 10.1038/srep05008.

PMID:
24852203
[PubMed - in process]
Free PMC Article
2.

Leveraging biological replicates to improve analysis in ChIP-seq experiments.

Yang Y, Fear J, Hu J, Haecker I, Zhou L, Renne R, Bloom D, McIntyre LM.

Comput Struct Biotechnol J. 2014 Jan 31;9:e201401002. doi: 10.5936/csbj.201401002. eCollection 2014.

PMID:
24688750
[PubMed]
Free PMC Article
3.

A novel peptide that inhibits E2F transcription and regresses prostate tumor xenografts.

Xie X, Bansal N, Shaik T, Kerrigan JE, Minko T, Garbuzenko O, Abali EE, Johnson-Farley N, Banerjee D, Scotto KW, Bertino JR.

Oncotarget. 2014 Feb 28;5(4):901-7.

PMID:
24658650
[PubMed - in process]
Free PMC Article
4.

Overexpression of cohesion establishment factor DSCC1 through E2F in colorectal cancer.

Yamaguchi K, Yamaguchi R, Takahashi N, Ikenoue T, Fujii T, Shinozaki M, Tsurita G, Hata K, Niida A, Imoto S, Miyano S, Nakamura Y, Furukawa Y.

PLoS One. 2014 Jan 17;9(1):e85750. doi: 10.1371/journal.pone.0085750. eCollection 2014.

PMID:
24465681
[PubMed - in process]
Free PMC Article
5.

A new paradigm for transcription factor TFIIB functionality.

Gelev V, Zabolotny JM, Lange M, Hiromura M, Yoo SW, Orlando JS, Kushnir A, Horikoshi N, Paquet E, Bachvarov D, Schaffer PA, Usheva A.

Sci Rep. 2014 Jan 20;4:3664. doi: 10.1038/srep03664.

PMID:
24441171
[PubMed - in process]
Free PMC Article
6.

MBD3 localizes at promoters, gene bodies and enhancers of active genes.

Shimbo T, Du Y, Grimm SA, Dhasarathy A, Mav D, Shah RR, Shi H, Wade PA.

PLoS Genet. 2013;9(12):e1004028. doi: 10.1371/journal.pgen.1004028. Epub 2013 Dec 26.

PMID:
24385926
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Human herpesvirus 6 (HHV-6) alters E2F1/Rb pathways and utilizes the E2F1 transcription factor to express viral genes.

Sharon E, Volchek L, Frenkel N.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):451-6. doi: 10.1073/pnas.1308854110. Epub 2013 Dec 12.

PMID:
24335704
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The transcriptional co-regulator HCF-1 is required for INS-1 β-cell glucose-stimulated insulin secretion.

Iwata TN, Cowley TJ, Sloma M, Ji Y, Kim H, Qi L, Lee SS.

PLoS One. 2013 Nov 8;8(11):e78841. doi: 10.1371/journal.pone.0078841. eCollection 2013.

PMID:
24250814
[PubMed - in process]
Free PMC Article
9.

Decoding a signature-based model of transcription cofactor recruitment dictated by cardinal cis-regulatory elements in proximal promoter regions.

Benner C, Konovalov S, Mackintosh C, Hutt KR, Stunnenberg R, Garcia-Bassets I.

PLoS Genet. 2013 Nov;9(11):e1003906. doi: 10.1371/journal.pgen.1003906. Epub 2013 Nov 7.

PMID:
24244184
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally.

Park DM, Akhtar MS, Ansari AZ, Landick R, Kiley PJ.

PLoS Genet. 2013;9(10):e1003839. doi: 10.1371/journal.pgen.1003839. Epub 2013 Oct 17.

PMID:
24146625
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

p53 regulates Period2 expression and the circadian clock.

Miki T, Matsumoto T, Zhao Z, Lee CC.

Nat Commun. 2013;4:2444. doi: 10.1038/ncomms3444.

PMID:
24051492
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Myc binds the pluripotency factor Utf1 through the basic-helix-loop-helix leucine zipper domain.

Laskowski AI, Knoepfler PS.

Biochem Biophys Res Commun. 2013 Jun 14;435(4):551-6. doi: 10.1016/j.bbrc.2013.04.100. Epub 2013 May 9.

PMID:
23665319
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Activation of a human chromosomal replication origin by protein tethering.

Chen X, Liu G, Leffak M.

Nucleic Acids Res. 2013 Jul;41(13):6460-74. doi: 10.1093/nar/gkt368. Epub 2013 May 8.

PMID:
23658226
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on the ENCODE array.

Vadnais C, Awan AA, Harada R, Clermont PL, Leduy L, Bérubé G, Nepveu A.

BMC Genomics. 2013 Apr 16;14:258. doi: 10.1186/1471-2164-14-258.

PMID:
23590133
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An inferential framework for biological network hypothesis tests.

Yates PD, Mukhopadhyay ND.

BMC Bioinformatics. 2013 Mar 14;14:94. doi: 10.1186/1471-2105-14-94.

PMID:
23496778
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Cooperative activation of tissue-specific genes by pRB and E2F1.

Flowers S, Xu F, Moran E.

Cancer Res. 2013 Apr 1;73(7):2150-8. doi: 10.1158/0008-5472.CAN-12-1745. Epub 2013 Jan 22.

PMID:
23341573
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Notch cooperates with Lozenge/Runx to lock haemocytes into a differentiation programme.

Terriente-Felix A, Li J, Collins S, Mulligan A, Reekie I, Bernard F, Krejci A, Bray S.

Development. 2013 Feb;140(4):926-37. doi: 10.1242/dev.086785. Epub 2013 Jan 16.

PMID:
23325760
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Modeling drug- and chemical-induced hepatotoxicity with systems biology approaches.

Bhattacharya S, Shoda LK, Zhang Q, Woods CG, Howell BA, Siler SQ, Woodhead JL, Yang Y, McMullen P, Watkins PB, Andersen ME.

Front Physiol. 2012 Dec 14;3:462. doi: 10.3389/fphys.2012.00462. eCollection 2012.

PMID:
23248599
[PubMed]
Free PMC Article
19.

Evidence for autoregulation and cell signaling pathway regulation from genome-wide binding of the Drosophila retinoblastoma protein.

Acharya P, Negre N, Johnston J, Wei Y, White KP, Henry RW, Arnosti DN.

G3 (Bethesda). 2012 Nov;2(11):1459-72. doi: 10.1534/g3.112.004424. Epub 2012 Nov 1.

PMID:
23173097
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

RAE-1 ligands for the NKG2D receptor are regulated by E2F transcription factors, which control cell cycle entry.

Jung H, Hsiung B, Pestal K, Procyk E, Raulet DH.

J Exp Med. 2012 Dec 17;209(13):2409-22. doi: 10.1084/jem.20120565. Epub 2012 Nov 19.

PMID:
23166357
[PubMed - indexed for MEDLINE]
Free PMC Article

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