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Items: 1 to 20 of 101

1.

What Is the Impact of mRNA 5' TL Heterogeneity on Translational Start Site Selection and the Mammalian Cellular Phenotype?

Curran JA, Weiss B.

Front Genet. 2016 Aug 31;7:156. doi: 10.3389/fgene.2016.00156. eCollection 2016. Review.

2.

Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe.

Blauwendraat C, Francescatto M, Gibbs JR, Jansen IE, Simón-Sánchez J, Hernandez DG, Dillman AA, Singleton AB, Cookson MR, Rizzu P, Heutink P.

Genome Med. 2016 Jun 10;8(1):65. doi: 10.1186/s13073-016-0320-1.

3.

Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.

Mustafiz A, Kumari S, Karan R.

Curr Genomics. 2016 Jun;17(3):155-76. doi: 10.2174/1389202917666160202215135.

PMID:
27252584
4.

Sustained expression of MCP-1 by low wall shear stress loading concomitant with turbulent flow on endothelial cells of intracranial aneurysm.

Aoki T, Yamamoto K, Fukuda M, Shimogonya Y, Fukuda S, Narumiya S.

Acta Neuropathol Commun. 2016 May 9;4(1):48. doi: 10.1186/s40478-016-0318-3.

5.

Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment.

Romano O, Peano C, Tagliazucchi GM, Petiti L, Poletti V, Cocchiarella F, Rizzi E, Severgnini M, Cavazza A, Rossi C, Pagliaro P, Ambrosi A, Ferrari G, Bicciato S, De Bellis G, Mavilio F, Miccio A.

Sci Rep. 2016 Apr 20;6:24724. doi: 10.1038/srep24724.

6.

Deep RNA-Seq profile reveals biodiversity, plant-microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues.

Chakraborty S, Britton M, Martínez-García PJ, Dandekar AM.

AMB Express. 2016 Mar;6(1):12. doi: 10.1186/s13568-016-0182-3. Epub 2016 Feb 17.

7.

YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut.

Chakraborty S, Britton M, Wegrzyn J, Butterfield T, Martínez-García PJ, Reagan RL, Rao BJ, Leslie CA, Aradhaya M, Neale D, Woeste K, Dandekar AM.

Version 2. F1000Res. 2015 Jun 17 [revised 2015 Nov 6];4:155. doi: 10.12688/f1000research.6617.2. eCollection 2015.

8.

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, Hayashizaki Y, Carninci P, Forrest AR; FANTOM Consortium, Semple CA, Dostie J, Pombo A, Nicodemi M.

Mol Syst Biol. 2015 Dec 23;11(12):852. doi: 10.15252/msb.20156492.

9.

Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors.

Lennartsson A, Arner E, Fagiolini M, Saxena A, Andersson R, Takahashi H, Noro Y, Sng J, Sandelin A, Hensch TK, Carninci P.

Epigenetics Chromatin. 2015 Dec 14;8:55. doi: 10.1186/s13072-015-0043-3. eCollection 2015.

10.

Where does transcription start? 5'-RACE adapted to next-generation sequencing.

Leenen FA, Vernocchi S, Hunewald OE, Schmitz S, Molitor AM, Muller CP, Turner JD.

Nucleic Acids Res. 2016 Apr 7;44(6):2628-45. doi: 10.1093/nar/gkv1328. Epub 2015 Nov 28.

11.

Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome.

Robert C, Kapetanovic R, Beraldi D, Watson M, Archibald AL, Hume DA.

BMC Genomics. 2015 Nov 18;16:970. doi: 10.1186/s12864-015-2111-2.

12.

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

O'Leary NA, Wright MW, Brister JR, Ciufo S, Haddad D, McVeigh R, Rajput B, Robbertse B, Smith-White B, Ako-Adjei D, Astashyn A, Badretdin A, Bao Y, Blinkova O, Brover V, Chetvernin V, Choi J, Cox E, Ermolaeva O, Farrell CM, Goldfarb T, Gupta T, Haft D, Hatcher E, Hlavina W, Joardar VS, Kodali VK, Li W, Maglott D, Masterson P, McGarvey KM, Murphy MR, O'Neill K, Pujar S, Rangwala SH, Rausch D, Riddick LD, Schoch C, Shkeda A, Storz SS, Sun H, Thibaud-Nissen F, Tolstoy I, Tully RE, Vatsan AR, Wallin C, Webb D, Wu W, Landrum MJ, Kimchi A, Tatusova T, DiCuccio M, Kitts P, Murphy TD, Pruitt KD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. doi: 10.1093/nar/gkv1189. Epub 2015 Nov 8.

13.

Promoter-like epigenetic signatures in exons displaying cell type-specific splicing.

Curado J, Iannone C, Tilgner H, Valcárcel J, Guigó R.

Genome Biol. 2015 Oct 23;16:236. doi: 10.1186/s13059-015-0797-8. Erratum in: Genome Biol. 2016;17(1):52.

14.

Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential.

Cava C, Bertoli G, Castiglioni I.

BMC Syst Biol. 2015 Sep 21;9:62. doi: 10.1186/s12918-015-0211-x. Review.

15.

DENdb: database of integrated human enhancers.

Ashoor H, Kleftogiannis D, Radovanovic A, Bajic VB.

Database (Oxford). 2015 Sep 5;2015. pii: bav085. doi: 10.1093/database/bav085. Print 2015.

16.

Paradigm shifts in genomics through the FANTOM projects.

de Hoon M, Shin JW, Carninci P.

Mamm Genome. 2015 Oct;26(9-10):391-402. doi: 10.1007/s00335-015-9593-8. Epub 2015 Aug 8.

17.

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium.

Yu NY, Hallström BM, Fagerberg L, Ponten F, Kawaji H, Carninci P, Forrest AR; Fantom Consortium, Hayashizaki Y, Uhlén M, Daub CO.

Nucleic Acids Res. 2015 Aug 18;43(14):6787-98. doi: 10.1093/nar/gkv608. Epub 2015 Jun 27.

18.

Disease-associated variants in different categories of disease located in distinct regulatory elements.

Ma M, Ru Y, Chuang LS, Hsu NY, Shi LS, Hakenberg J, Cheng WY, Uzilov A, Ding W, Glicksberg BS, Chen R.

BMC Genomics. 2015;16 Suppl 8:S3. doi: 10.1186/1471-2164-16-S8-S3. Epub 2015 Jun 18.

19.

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

Weirather JL, Afshar PT, Clark TA, Tseng E, Powers LS, Underwood JG, Zabner J, Korlach J, Wong WH, Au KF.

Nucleic Acids Res. 2015 Oct 15;43(18):e116. doi: 10.1093/nar/gkv562. Epub 2015 Jun 3.

20.

Choosing the Right Tool for the Job: RNAi, TALEN, or CRISPR.

Boettcher M, McManus MT.

Mol Cell. 2015 May 21;58(4):575-85. doi: 10.1016/j.molcel.2015.04.028. Review.

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