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Items: 1 to 20 of 24

1.

Targeted metagenomics unveils the molecular basis for adaptive evolution of enzymes to their environment.

Suenaga H.

Front Microbiol. 2015 Sep 22;6:1018. doi: 10.3389/fmicb.2015.01018. eCollection 2015. Review.

2.

Expanding the Halohydrin Dehalogenase Enzyme Family: Identification of Novel Enzymes by Database Mining.

Schallmey M, Koopmeiners J, Wells E, Wardenga R, Schallmey A.

Appl Environ Microbiol. 2014 Dec;80(23):7303-15. doi: 10.1128/AEM.01985-14. Epub 2014 Sep 19.

3.

Compositional profile of α / β-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites.

Jiménez DJ, Dini-Andreote F, Ottoni JR, de Oliveira VM, van Elsas JD, Andreote FD.

Microb Biotechnol. 2015 May;8(3):604-13. doi: 10.1111/1751-7915.12157. Epub 2014 Aug 29.

4.

Biochemical characterization of a haloalkane dehalogenase DadB from Alcanivorax dieselolei B-5.

Li A, Shao Z.

PLoS One. 2014 Feb 28;9(2):e89144. doi: 10.1371/journal.pone.0089144. eCollection 2014.

5.

Inverting hydrolases and their use in enantioconvergent biotransformations.

Schober M, Faber K.

Trends Biotechnol. 2013 Aug;31(8):468-78. doi: 10.1016/j.tibtech.2013.05.005. Epub 2013 Jun 25. Review.

6.

Crystallographic analysis of new psychrophilic haloalkane dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17.

Tratsiak K, Degtjarik O, Drienovska I, Chrast L, Rezacova P, Kuty M, Chaloupkova R, Damborsky J, Kuta Smatanova I.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):683-8. doi: 10.1107/S1744309113012979. Epub 2013 May 25.

7.

Metagenomic identification of bacterioplankton taxa and pathways involved in microcystin degradation in lake erie.

Mou X, Lu X, Jacob J, Sun S, Heath R.

PLoS One. 2013 Apr 24;8(4):e61890. doi: 10.1371/journal.pone.0061890. Print 2013.

8.

Isolation and characterisation of 1-alkyl-3-methylimidazolium chloride ionic liquid-tolerant and biodegrading marine bacteria.

Megaw J, Busetti A, Gilmore BF.

PLoS One. 2013;8(4):e60806. doi: 10.1371/journal.pone.0060806. Epub 2013 Apr 1.

9.

Differences in crystallization of two LinB variants from Sphingobium japonicum UT26.

Degtjarik O, Chaloupkova R, Rezacova P, Kuty M, Damborsky J, Kuta Smatanova I.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Mar 1;69(Pt 3):284-7. doi: 10.1107/S1744309113002467. Epub 2013 Feb 22.

10.

Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae.

Nikel PI, Pérez-Pantoja D, de Lorenzo V.

Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120377. doi: 10.1098/rstb.2012.0377. Print 2013 Apr 19.

11.

Animals in a bacterial world, a new imperative for the life sciences.

McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36. doi: 10.1073/pnas.1218525110. Epub 2013 Feb 7. Review.

12.

Bioenergetic strategy for the biodegradation of p-cresol by the unicellular green alga Scenedesmus obliquus.

Papazi A, Assimakopoulos K, Kotzabasis K.

PLoS One. 2012;7(12):e51852. doi: 10.1371/journal.pone.0051852. Epub 2012 Dec 14.

13.

Development of a dehalogenase-based protein fusion tag capable of rapid, selective and covalent attachment to customizable ligands.

Encell LP, Friedman Ohana R, Zimmerman K, Otto P, Vidugiris G, Wood MG, Los GV, McDougall MG, Zimprich C, Karassina N, Learish RD, Hurst R, Hartnett J, Wheeler S, Stecha P, English J, Zhao K, Mendez J, Benink HA, Murphy N, Daniels DL, Slater MR, Urh M, Darzins A, Klaubert DH, Bulleit RF, Wood KV.

Curr Chem Genomics. 2012;6:55-71. doi: 10.2174/1875397301206010055. Epub 2012 Oct 5.

14.

High yields of hydrogen production induced by meta-substituted dichlorophenols biodegradation from the green alga Scenedesmus obliquus.

Papazi A, Andronis E, Ioannidis NE, Chaniotakis N, Kotzabasis K.

PLoS One. 2012;7(11):e49037. doi: 10.1371/journal.pone.0049037. Epub 2012 Nov 7.

15.

Developing a metagenomic view of xenobiotic metabolism.

Haiser HJ, Turnbaugh PJ.

Pharmacol Res. 2013 Mar;69(1):21-31. doi: 10.1016/j.phrs.2012.07.009. Epub 2012 Aug 9. Review.

16.

Transformation and biodegradation of 1,2,3-trichloropropane (TCP).

Samin G, Janssen DB.

Environ Sci Pollut Res Int. 2012 Sep;19(8):3067-78. doi: 10.1007/s11356-012-0859-3. Epub 2012 Aug 8. Review.

17.

2-haloacrylate hydratase, a new class of flavoenzyme that catalyzes the addition of water to the substrate for dehalogenation.

Mowafy AM, Kurihara T, Kurata A, Uemura T, Esaki N.

Appl Environ Microbiol. 2010 Sep;76(18):6032-7. doi: 10.1128/AEM.00334-10. Epub 2010 Jul 23.

18.

Association of missense mutations in epoxyalkane coenzyme M transferase with adaptation of Mycobacterium sp. strain JS623 to growth on vinyl chloride.

Jin YO, Cheung S, Coleman NV, Mattes TE.

Appl Environ Microbiol. 2010 Jun;76(11):3413-9. doi: 10.1128/AEM.01320-09. Epub 2010 Apr 2.

19.

Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94.

Prudnikova T, Mozga T, Rezacova P, Chaloupkova R, Sato Y, Nagata Y, Brynda J, Kuty M, Damborsky J, Smatanova IK.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Apr 1;65(Pt 4):353-6. doi: 10.1107/S1744309109007039. Epub 2009 Mar 21.

20.

Genome-scale models of bacterial metabolism: reconstruction and applications.

Durot M, Bourguignon PY, Schachter V.

FEMS Microbiol Rev. 2009 Jan;33(1):164-90. doi: 10.1111/j.1574-6976.2008.00146.x. Epub 2008 Dec 3. Review.

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