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Alkaliphilic Bacteria with Impact on Industrial Applications, Concepts of Early Life Forms, and Bioenergetics of ATP Synthesis.

Preiss L, Hicks DB, Suzuki S, Meier T, Krulwich TA.

Front Bioeng Biotechnol. 2015 Jun 3;3:75. doi: 10.3389/fbioe.2015.00075. eCollection 2015. Review.


Genome Sequence of the Alkaline-Tolerant Cellulomonas sp. Strain FA1.

Cohen MF, Hu P, Nguyen MV, Kamennaya N, Brown N, Woyke T, Kyrpides N, Holman HY, Torok T.

Genome Announc. 2015 Jun 18;3(3). pii: e00646-15. doi: 10.1128/genomeA.00646-15.


Draft Genome Sequence of Bacillus alcalophilus AV1934, a Classic Alkaliphile Isolated from Human Feces in 1934.

Attie O, Jayaprakash A, Shah H, Paulsen IT, Morino M, Takahashi Y, Narumi I, Sachidanandam R, Satoh K, Ito M, Krulwich TA.

Genome Announc. 2014 Nov 13;2(6). pii: e01175-14. doi: 10.1128/genomeA.01175-14.


Energy conservation by oxidation of formate to carbon dioxide and hydrogen via a sodium ion current in a hyperthermophilic archaeon.

Lim JK, Mayer F, Kang SG, Müller V.

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11497-502. doi: 10.1073/pnas.1407056111. Epub 2014 Jul 21.


Intact functional fourteen-subunit respiratory membrane-bound [NiFe]-hydrogenase complex of the hyperthermophilic archaeon Pyrococcus furiosus.

McTernan PM, Chandrayan SK, Wu CH, Vaccaro BJ, Lancaster WA, Yang Q, Fu D, Hura GL, Tainer JA, Adams MW.

J Biol Chem. 2014 Jul 11;289(28):19364-72. doi: 10.1074/jbc.M114.567255. Epub 2014 May 23.


Genomes of "Spiribacter", a streamlined, successful halophilic bacterium.

López-Pérez M, Ghai R, Leon MJ, Rodríguez-Olmos Á, Copa-Patiño JL, Soliveri J, Sanchez-Porro C, Ventosa A, Rodriguez-Valera F.

BMC Genomics. 2013 Nov 13;14:787. doi: 10.1186/1471-2164-14-787.


Purification and functional reconstitution of a seven-subunit mrp-type na+/h+ antiporter.

Morino M, Suzuki T, Ito M, Krulwich TA.

J Bacteriol. 2014 Jan;196(1):28-35. doi: 10.1128/JB.01029-13. Epub 2013 Oct 18.


MrpA functions in energy conversion during acetate-dependent growth of Methanosarcina acetivorans.

Jasso-Chávez R, Apolinario EE, Sowers KR, Ferry JG.

J Bacteriol. 2013 Sep;195(17):3987-94. doi: 10.1128/JB.00581-13. Epub 2013 Jul 8. Erratum in: J Bacteriol. 2014 Feb;196(3):716.


The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.

Aklujkar M, Haveman SA, DiDonato R Jr, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.

BMC Genomics. 2012 Dec 10;13:690. doi: 10.1186/1471-2164-13-690.


Comparative genomics reveals evidence of marine adaptation in Salinispora species.

Penn K, Jensen PR.

BMC Genomics. 2012 Mar 8;13:86. doi: 10.1186/1471-2164-13-86.


Listeria monocytogenes shows temperature-dependent and -independent responses to salt stress, including responses that induce cross-protection against other stresses.

Bergholz TM, Bowen B, Wiedmann M, Boor KJ.

Appl Environ Microbiol. 2012 Apr;78(8):2602-12. doi: 10.1128/AEM.07658-11. Epub 2012 Feb 3.


Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4.

Janto B, Ahmed A, Ito M, Liu J, Hicks DB, Pagni S, Fackelmayer OJ, Smith TA, Earl J, Elbourne LD, Hassan K, Paulsen IT, Kolstø AB, Tourasse NJ, Ehrlich GD, Boissy R, Ivey DM, Li G, Xue Y, Ma Y, Hu FZ, Krulwich TA.

Environ Microbiol. 2011 Dec;13(12):3289-309. doi: 10.1111/j.1462-2920.2011.02591.x. Epub 2011 Sep 27.


The evolution of respiratory chain complex I from a smaller last common ancestor consisting of 11 protein subunits.

Moparthi VK, Hägerhäll C.

J Mol Evol. 2011 Jun;72(5-6):484-97. doi: 10.1007/s00239-011-9447-2. Epub 2011 May 20.


Molecular aspects of bacterial pH sensing and homeostasis.

Krulwich TA, Sachs G, Padan E.

Nat Rev Microbiol. 2011 May;9(5):330-43. doi: 10.1038/nrmicro2549. Epub 2011 Apr 5. Review.


Mutagenesis of the L, M, and N subunits of Complex I from Escherichia coli indicates a common role in function.

Michel J, DeLeon-Rangel J, Zhu S, Van Ree K, Vik SB.

PLoS One. 2011 Feb 28;6(2):e17420. doi: 10.1371/journal.pone.0017420.


Complete genome sequence of Thermosphaera aggregans type strain (M11TL).

Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CC, Brettin T, Detter JC, Tapia R, Han C, Heimerl T, Weikl F, Brambilla E, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2010 Jun 15;2(3):245-59. doi: 10.4056/sigs.821804.


The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments.

Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Lykidis A, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Goodwin L, Detter JC, Brettin T, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Archaea. 2010 Dec 23;2010:690737. doi: 10.1155/2010/690737.


F1F0-ATP synthases of alkaliphilic bacteria: lessons from their adaptations.

Hicks DB, Liu J, Fujisawa M, Krulwich TA.

Biochim Biophys Acta. 2010 Aug;1797(8):1362-77. doi: 10.1016/j.bbabio.2010.02.028. Epub 2010 Mar 1. Review.

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