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Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides.

Alexander WG, Wisecaver JH, Rokas A, Hittinger CT.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4116-21. doi: 10.1073/pnas.1517242113. Epub 2016 Mar 29.


Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes.

Lee J, Kim KM, Yang EC, Miller KA, Boo SM, Bhattacharya D, Yoon HS.

Sci Rep. 2016 Mar 31;6:23744. doi: 10.1038/srep23744.


Molecular and functional evolution of the fungal diterpene synthase genes.

Fischer MJ, Rustenhloz C, Leh-Louis V, Perrière G.

BMC Microbiol. 2015 Oct 19;15:221. doi: 10.1186/s12866-015-0564-8.


The genomics of microbial domestication in the fermented food environment.

Gibbons JG, Rinker DC.

Curr Opin Genet Dev. 2015 Dec;35:1-8. doi: 10.1016/j.gde.2015.07.003. Epub 2015 Aug 25. Review.


Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jun 25;5:11571. doi: 10.1038/srep11571. Erratum in: Sci Rep. 2015;5:12596.


Fungal metabolic gene clusters-caravans traveling across genomes and environments.

Wisecaver JH, Rokas A.

Front Microbiol. 2015 Mar 3;6:161. doi: 10.3389/fmicb.2015.00161. eCollection 2015. Review.


Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts.

Marsit S, Mena A, Bigey F, Sauvage FX, Couloux A, Guy J, Legras JL, Barrio E, Dequin S, Galeote V.

Mol Biol Evol. 2015 Jul;32(7):1695-707. doi: 10.1093/molbev/msv057. Epub 2015 Mar 6.


Sul1 and Sul2 sulfate transceptors signal to protein kinase A upon exit of sulfur starvation.

Kankipati HN, Rubio-Texeira M, Castermans D, Diallinas G, Thevelein JM.

J Biol Chem. 2015 Apr 17;290(16):10430-46. doi: 10.1074/jbc.M114.629022. Epub 2015 Feb 27.


The evolution of fungal metabolic pathways.

Wisecaver JH, Slot JC, Rokas A.

PLoS Genet. 2014 Dec 4;10(12):e1004816. doi: 10.1371/journal.pgen.1004816. eCollection 2014 Dec. Erratum in: PLoS Genet. 2015 Sep;11(9):e1005449.


Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis.

Gomes D, Aguiar TQ, Dias O, Ferreira EC, Domingues L, Rocha I.

BMC Genomics. 2014 Sep 24;15:810. doi: 10.1186/1471-2164-15-810.


Lager yeast comes of age.

Wendland J.

Eukaryot Cell. 2014 Oct;13(10):1256-65. doi: 10.1128/EC.00134-14. Epub 2014 Aug 1. Review.


Inferring gene family histories in yeast identifies lineage specific expansions.

Ames RM, Money D, Lovell SC.

PLoS One. 2014 Jun 12;9(6):e99480. doi: 10.1371/journal.pone.0099480. eCollection 2014.


Improving industrial yeast strains: exploiting natural and artificial diversity.

Steensels J, Snoek T, Meersman E, Picca Nicolino M, Voordeckers K, Verstrepen KJ.

FEMS Microbiol Rev. 2014 Sep;38(5):947-95. doi: 10.1111/1574-6976.12073. Epub 2014 May 8. Review.


On the complexity of the Saccharomyces bayanus taxon: hybridization and potential hybrid speciation.

Pérez-Través L, Lopes CA, Querol A, Barrio E.

PLoS One. 2014 Apr 4;9(4):e93729. doi: 10.1371/journal.pone.0093729. eCollection 2014.


QTL dissection of Lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulfite.

Zimmer A, Durand C, Loira N, Durrens P, Sherman DJ, Marullo P.

PLoS One. 2014 Jan 28;9(1):e86298. doi: 10.1371/journal.pone.0086298. eCollection 2014.


Trans-kingdom horizontal DNA transfer from bacteria to yeast is highly plastic due to natural polymorphisms in auxiliary nonessential recipient genes.

Moriguchi K, Yamamoto S, Tanaka K, Kurata N, Suzuki K.

PLoS One. 2013 Sep 13;8(9):e74590. doi: 10.1371/journal.pone.0074590. eCollection 2013. Erratum in: PLoS One. 2015;10(4):e0126431.


New gene evolution: little did we know.

Long M, VanKuren NW, Chen S, Vibranovski MD.

Annu Rev Genet. 2013;47:307-33. doi: 10.1146/annurev-genet-111212-133301. Epub 2013 Sep 13. Review.


Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts.

Artamonova II, Mushegian AR.

Appl Environ Microbiol. 2013 Nov;79(22):6868-73. doi: 10.1128/AEM.01635-13. Epub 2013 Aug 30.


Extensive intra-kingdom horizontal gene transfer converging on a fungal fructose transporter gene.

Coelho MA, Gonçalves C, Sampaio JP, Gonçalves P.

PLoS Genet. 2013 Jun;9(6):e1003587. doi: 10.1371/journal.pgen.1003587. Epub 2013 Jun 20.


Horizontal transfer and evolution of prokaryote transposable elements in eukaryotes.

Gilbert C, Cordaux R.

Genome Biol Evol. 2013;5(5):822-32. doi: 10.1093/gbe/evt057.

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