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Items: 14

1.

Genome Scan for Selection in Structured Layer Chicken Populations Exploiting Linkage Disequilibrium Information.

Gholami M, Reimer C, Erbe M, Preisinger R, Weigend A, Weigend S, Servin B, Simianer H.

PLoS One. 2015 Jul 7;10(7):e0130497. doi: 10.1371/journal.pone.0130497. eCollection 2015.

2.

Detecting and comparing non-coding RNAs in the high-throughput era.

Bussotti G, Notredame C, Enright AJ.

Int J Mol Sci. 2013 Jul 24;14(8):15423-58. doi: 10.3390/ijms140815423. Review.

3.

Re-annotation is an essential step in systems biology modeling of functional genomics data.

van den Berg BH, McCarthy FM, Lamont SJ, Burgess SC.

PLoS One. 2010 May 14;5(5):e10642. doi: 10.1371/journal.pone.0010642.

4.

The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species.

Mazza R, Strozzi F, Caprera A, Ajmone-Marsan P, Williams JL.

BMC Genomics. 2009 Dec 14;10:604. doi: 10.1186/1471-2164-10-604.

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A general definition and nomenclature for alternative splicing events.

Sammeth M, Foissac S, Guigó R.

PLoS Comput Biol. 2008 Aug 8;4(8):e1000147. doi: 10.1371/journal.pcbi.1000147.

7.

Targeted discovery of novel human exons by comparative genomics.

Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S, Lau C, Yu HC, Li J, Roe BA, Green P, Gerhard DS, Temple G, Haussler D, Brent MR.

Genome Res. 2007 Dec;17(12):1763-73. Epub 2007 Nov 7.

8.

Characterising alternate splicing and tissue specific expression in the chicken from ESTs.

Tang H, Heeley T, Morlec R, Hubbard SJ.

Cytogenet Genome Res. 2007;117(1-4):268-77.

9.

Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome.

Moskal WA Jr, Wu HC, Underwood BA, Wang W, Town CD, Xiao Y.

BMC Genomics. 2007 Jan 17;8:18.

10.

AgBase: a unified resource for functional analysis in agriculture.

McCarthy FM, Bridges SM, Wang N, Magee GB, Williams WP, Luthe DS, Burgess SC.

Nucleic Acids Res. 2007 Jan;35(Database issue):D599-603. Epub 2006 Nov 29.

11.

AgBase: a functional genomics resource for agriculture.

McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC.

BMC Genomics. 2006 Sep 8;7:229.

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EGASP: the human ENCODE Genome Annotation Assessment Project.

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

14.

ASGS: an alternative splicing graph web service.

Bollina D, Lee BT, Tan TW, Ranganathan S.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W444-7.

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