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Results: 1 to 20 of 52

1.

Tracing the evolution of amniote chromosomes.

Deakin JE, Ezaz T.

Chromosoma. 2014 Jun;123(3):201-16. doi: 10.1007/s00412-014-0456-y. Epub 2014 Mar 25.

PMID:
24664317
[PubMed - in process]
Free PMC Article
2.

Heterogeneous tempo and mode of conserved noncoding sequence evolution among four mammalian orders.

Babarinde IA, Saitou N.

Genome Biol Evol. 2013;5(12):2330-43. doi: 10.1093/gbe/evt177.

PMID:
24259317
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype.

Mugal CF, Arndt PF, Ellegren H.

Mol Biol Evol. 2013 Jul;30(7):1700-12. doi: 10.1093/molbev/mst067. Epub 2013 Apr 5.

PMID:
23564940
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Reference-assisted chromosome assembly.

Kim J, Larkin DM, Cai Q, Asan, Zhang Y, Ge RL, Auvil L, Capitanu B, Zhang G, Lewin HA, Ma J.

Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1785-90. doi: 10.1073/pnas.1220349110. Epub 2013 Jan 10.

PMID:
23307812
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Deep ancestry of mammalian X chromosome revealed by comparison with the basal tetrapod Xenopus tropicalis.

Mácha J, Teichmanová R, Sater AK, Wells DE, Tlapáková T, Zimmerman LB, Krylov V.

BMC Genomics. 2012 Jul 16;13:315. doi: 10.1186/1471-2164-13-315.

PMID:
22800176
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.

Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB.

Genome Res. 2012 Dec;22(12):2356-67. doi: 10.1101/gr.139725.112. Epub 2012 Jun 21.

PMID:
22722344
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes.

Lv J, Havlak P, Putnam NH.

BMC Bioinformatics. 2011 Oct 5;12 Suppl 9:S11. doi: 10.1186/1471-2105-12-S9-S11.

PMID:
22151646
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Molecular cytogenetic and genomic insights into chromosomal evolution.

Ruiz-Herrera A, Farré M, Robinson TJ.

Heredity (Edinb). 2012 Jan;108(1):28-36. doi: 10.1038/hdy.2011.102. Epub 2011 Nov 23. Review.

PMID:
22108627
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The genome diversity and karyotype evolution of mammals.

Graphodatsky AS, Trifonov VA, Stanyon R.

Mol Cytogenet. 2011 Oct 12;4:22. doi: 10.1186/1755-8166-4-22.

PMID:
21992653
[PubMed]
Free PMC Article
10.

Computational methods for Gene Orthology inference.

Kristensen DM, Wolf YI, Mushegian AR, Koonin EV.

Brief Bioinform. 2011 Sep;12(5):379-91. doi: 10.1093/bib/bbr030. Epub 2011 Jun 19.

PMID:
21690100
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A consensus linkage map of the grass carp (Ctenopharyngodon idella) based on microsatellites and SNPs.

Xia JH, Liu F, Zhu ZY, Fu J, Feng J, Li J, Yue GH.

BMC Genomics. 2010 Feb 24;11:135. doi: 10.1186/1471-2164-11-135.

PMID:
20181260
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Regional regulation of transcription in the chicken genome.

Nie H, Crooijmans RP, Bastiaansen JW, Megens HJ, Groenen MA.

BMC Genomics. 2010 Jan 14;11:28. doi: 10.1186/1471-2164-11-28.

PMID:
20074332
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Assessing the quality of whole genome alignments in bacteria.

Swidan F, Shamir R.

Adv Bioinformatics. 2009:749027. doi: 10.1155/2009/749027. Epub 2009 Nov 15.

PMID:
20049164
[PubMed]
Free PMC Article
14.

Correlation of microsynteny conservation and disease gene distribution in mammalian genomes.

Lovell SC, Li X, Weerasinghe NR, Hentges KE.

BMC Genomics. 2009 Nov 12;10:521. doi: 10.1186/1471-2164-10-521.

PMID:
19909546
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation.

Lemaitre C, Zaghloul L, Sagot MF, Gautier C, Arneodo A, Tannier E, Audit B.

BMC Genomics. 2009 Jul 24;10:335. doi: 10.1186/1471-2164-10-335.

PMID:
19630943
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty.

Longo MS, Carone DM; NISC Comparative Sequencing Program, Green ED, O'Neill MJ, O'Neill RJ.

BMC Genomics. 2009 Jul 24;10:334. doi: 10.1186/1471-2164-10-334.

PMID:
19630942
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

MapToGenome: a comparative genomic tool that aligns transcript maps to sequenced genomes.

Putta S, Smith JJ, Staben C, Voss SR.

Evol Bioinform Online. 2007 Feb 14;3:15-25.

PMID:
19430601
[PubMed]
Free PMC Article
18.

Characteristics of human and mouse orthologous protein-coding nucleotide sequences with large g+c content variations.

Nakashima H.

Curr Genomics. 2007 Nov;8(7):445-52. doi: 10.2174/138920207783591708.

PMID:
19412417
[PubMed]
Free PMC Article
19.

Recovering genome rearrangements in the mammalian phylogeny.

Zhao H, Bourque G.

Genome Res. 2009 May;19(5):934-42. doi: 10.1101/gr.086009.108.

PMID:
19411607
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution.

Kemkemer C, Kohn M, Cooper DN, Froenicke L, Högel J, Hameister H, Kehrer-Sawatzki H.

BMC Evol Biol. 2009 Apr 24;9:84. doi: 10.1186/1471-2148-9-84.

PMID:
19393055
[PubMed - indexed for MEDLINE]
Free PMC Article

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