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Items: 18

1.

Predicted protein-protein interactions in the moss Physcomitrella patens: a new bioinformatic resource.

Schuette S, Piatkowski B, Corley A, Lang D, Geisler M.

BMC Bioinformatics. 2015 Mar 16;16:89. doi: 10.1186/s12859-015-0524-1.

2.

A proteomic strategy for global analysis of plant protein complexes.

Aryal UK, Xiong Y, McBride Z, Kihara D, Xie J, Hall MC, Szymanski DB.

Plant Cell. 2014 Oct;26(10):3867-82. doi: 10.1105/tpc.114.127563. Epub 2014 Oct 7.

3.

Metabolic adaptation and protein complexes in prokaryotes.

Krüger B, Liang C, Prell F, Fieselmann A, Moya A, Schuster S, Völker U, Dandekar T.

Metabolites. 2012 Nov 16;2(4):940-58. doi: 10.3390/metabo2040940.

4.

Induction of endoplasmic reticulum-derived replication-competent membrane structures by West Nile virus non-structural protein 4B.

Kaufusi PH, Kelley JF, Yanagihara R, Nerurkar VR.

PLoS One. 2014 Jan 20;9(1):e84040. doi: 10.1371/journal.pone.0084040. eCollection 2014.

5.

A predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology.

Seidl MF, Schneider A, Govers F, Snel B.

BMC Genomics. 2013 Jul 17;14:483. doi: 10.1186/1471-2164-14-483.

6.

Predicting permanent and transient protein-protein interfaces.

La D, Kong M, Hoffman W, Choi YI, Kihara D.

Proteins. 2013 May;81(5):805-18. doi: 10.1002/prot.24235. Epub 2013 Jan 15.

7.

Setting Up a Bioluminescence Resonance Energy Transfer High throughput Screening Assay to Search for Protein/Protein Interaction Inhibitors in Mammalian Cells.

Couturier C, Deprez B.

Front Endocrinol (Lausanne). 2012 Sep 11;3:100. doi: 10.3389/fendo.2012.00100. eCollection 2012.

8.

Different evolutionary modifications as a guide to rewire two-component systems.

Krueger B, Friedrich T, Förster F, Bernhardt J, Gross R, Dandekar T.

Bioinform Biol Insights. 2012;6:97-128. doi: 10.4137/BBI.S9356. Epub 2012 May 3.

9.

Networked buffering: a basic mechanism for distributed robustness in complex adaptive systems.

Whitacre JM, Bender A.

Theor Biol Med Model. 2010 Jun 15;7:20. doi: 10.1186/1742-4682-7-20.

10.

Exploring functional roles of multibinding protein interfaces.

Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR.

Protein Sci. 2009 Aug;18(8):1674-83. doi: 10.1002/pro.181.

11.

Evolutionary flexibility of protein complexes.

Seidl MF, Schultz J.

BMC Evol Biol. 2009 Jul 7;9:155. doi: 10.1186/1471-2148-9-155.

12.

Identifying protein complexes directly from high-throughput TAP data with Markov random fields.

Rungsarityotin W, Krause R, Schödl A, Schliep A.

BMC Bioinformatics. 2007 Dec 19;8:482.

13.

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution.

Kensche PR, van Noort V, Dutilh BE, Huynen MA.

J R Soc Interface. 2008 Feb 6;5(19):151-70. Review.

14.
15.

Stratus not altocumulus: a new view of the yeast protein interaction network.

Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M.

PLoS Biol. 2006 Oct;4(10):e317.

16.

Yeast Protein Interactome topology provides framework for coordinated-functionality.

Valente AX, Cusick ME.

Nucleic Acids Res. 2006 May 22;34(9):2812-9. Print 2006.

17.

Analysis of and function predictions for previously conserved hypothetical or putative proteins in Blochmannia floridanus.

Gaudermann P, Vogl I, Zientz E, Silva FJ, Moya A, Gross R, Dandekar T.

BMC Microbiol. 2006 Jan 9;6:1.

18.

Structure, function, and evolution of transient and obligate protein-protein interactions.

Mintseris J, Weng Z.

Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):10930-5. Epub 2005 Jul 25.

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