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Results: 1 to 20 of 49

1.

Gene perturbation and intervention in context-sensitive stochastic Boolean networks.

Zhu P, Liang J, Han J.

BMC Syst Biol. 2014 May 21;8:60. doi: 10.1186/1752-0509-8-60.

PMID:
24886608
[PubMed - in process]
Free PMC Article
2.

The biological microprocessor, or how to build a computer with biological parts.

Moe-Behrens GH.

Comput Struct Biotechnol J. 2013 Jun 26;7:e201304003. doi: 10.5936/csbj.201304003. eCollection 2013. Review.

PMID:
24688733
[PubMed]
Free PMC Article
3.

How to make a synthetic multicellular computer.

Macia J, Sole R.

PLoS One. 2014 Feb 19;9(2):e81248. doi: 10.1371/journal.pone.0081248. eCollection 2014.

PMID:
24586222
[PubMed - in process]
Free PMC Article
4.

Computing by molecular self-assembly.

Jonoska N, Seeman NC.

Interface Focus. 2012 Aug 6;2(4):504-11. doi: 10.1098/rsfs.2011.0117. Epub 2012 Feb 8.

PMID:
23919130
[PubMed]
Free PMC Article
5.

Autonomous molecular cascades for evaluation of cell surfaces.

Rudchenko M, Taylor S, Pallavi P, Dechkovskaia A, Khan S, Butler VP Jr, Rudchenko S, Stojanovic MN.

Nat Nanotechnol. 2013 Aug;8(8):580-6. doi: 10.1038/nnano.2013.142. Epub 2013 Jul 28.

PMID:
23892986
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Lighting up left-handed Z-DNA: photoluminescent carbon dots induce DNA B to Z transition and perform DNA logic operations.

Feng L, Zhao A, Ren J, Qu X.

Nucleic Acids Res. 2013 Sep;41(16):7987-96. doi: 10.1093/nar/gkt575. Epub 2013 Jun 27.

PMID:
23814186
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

In-silico design of computational nucleic acids for molecular information processing.

Ramlan EI, Zauner KP.

J Cheminform. 2013 May 7;5(1):22. doi: 10.1186/1758-2946-5-22.

PMID:
23647621
[PubMed]
Free PMC Article
8.

A library of programmable DNAzymes that operate in a cellular environment.

Kahan-Hanum M, Douek Y, Adar R, Shapiro E.

Sci Rep. 2013;3:1535. doi: 10.1038/srep01535.

PMID:
23525068
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Logic reversibility and thermodynamic irreversibility demonstrated by DNAzyme-based Toffoli and Fredkin logic gates.

Orbach R, Remacle F, Levine RD, Willner I.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21228-33. doi: 10.1073/pnas.1219672110. Epub 2012 Dec 12.

PMID:
23236131
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A logical molecular circuit for programmable and autonomous regulation of protein activity using DNA aptamer-protein interactions.

Han D, Zhu Z, Wu C, Peng L, Zhou L, Gulbakan B, Zhu G, Williams KR, Tan W.

J Am Chem Soc. 2012 Dec 26;134(51):20797-804. doi: 10.1021/ja310428s. Epub 2012 Dec 13.

PMID:
23194304
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Programmable in vivo selection of arbitrary DNA sequences.

Ben Yehezkel T, Biezuner T, Linshiz G, Mazor Y, Shapiro E.

PLoS One. 2012;7(11):e47795. doi: 10.1371/journal.pone.0047795. Epub 2012 Nov 14. Erratum in: PLoS One. 2012;7(11). doi:10.1371/annotation/8e888220-8d00-4552-b468-4694e6bd9d47.

PMID:
23155373
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A Programmable Transducer Self-Assembled from DNA.

Chakraborty B, Jonoska N, Seeman NC.

Chem Sci. 2012 Jan 1;3(1):168-176. Epub 2011 Nov 10.

PMID:
23139854
[PubMed]
Free PMC Article
13.

Stochastic Boolean networks: an efficient approach to modeling gene regulatory networks.

Liang J, Han J.

BMC Syst Biol. 2012 Aug 28;6:113. doi: 10.1186/1752-0509-6-113.

PMID:
22929591
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

Kobori S, Ichihashi N, Kazuta Y, Matsuura T, Yomo T.

RNA. 2012 Aug;18(8):1458-65. doi: 10.1261/rna.032748.112. Epub 2012 Jun 25.

PMID:
22733807
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A mechanical Turing machine: blueprint for a biomolecular computer.

Shapiro E.

Interface Focus. 2012 Aug 6;2(4):497-503. doi: 10.1098/rsfs.2011.0118. Epub 2012 Mar 21.

PMID:
22649583
[PubMed]
Free PMC Article
16.

An evolution based biosensor receptor DNA sequence generation algorithm.

Kim E, Lee M, Gatton TM, Lee J, Zang Y.

Sensors (Basel). 2010;10(1):330-41. doi: 10.3390/s100100330. Epub 2009 Dec 31.

PMID:
22315543
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Configuring robust DNA strand displacement reactions for in situ molecular analyses.

Duose DY, Schweller RM, Zimak J, Rogers AR, Hittelman WN, Diehl MR.

Nucleic Acids Res. 2012 Apr;40(7):3289-98. doi: 10.1093/nar/gkr1209. Epub 2011 Dec 11.

PMID:
22156404
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Beyond DNA origami: the unfolding prospects of nucleic acid nanotechnology.

Michelotti N, Johnson-Buck A, Manzo AJ, Walter NG.

Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2012 Mar-Apr;4(2):139-52. doi: 10.1002/wnan.170. Epub 2011 Nov 30. Review.

PMID:
22131292
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Expanding the rule set of DNA circuitry with associative toehold activation.

Chen X.

J Am Chem Soc. 2012 Jan 11;134(1):263-71. doi: 10.1021/ja206690a. Epub 2011 Dec 14.

PMID:
22129141
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Algorithms in nature: the convergence of systems biology and computational thinking.

Navlakha S, Bar-Joseph Z.

Mol Syst Biol. 2011 Nov 8;7:546. doi: 10.1038/msb.2011.78. Review.

PMID:
22068329
[PubMed - indexed for MEDLINE]
Free PMC Article

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