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Results: 1 to 20 of 24

1.

Physiological levels of salt and polyamines favor writhe and limit twist in DNA.

Shao Q, Goyal S, Finzi L, Dunlap D.

Macromolecules. 2012 Apr 10;45(7):3188-3196. Epub 2012 Mar 30.

PMID:
23526178
[PubMed]
Free PMC Article
2.

Minor groove binder distamycin remodels chromatin but inhibits transcription.

Majumder P, Banerjee A, Shandilya J, Senapati P, Chatterjee S, Kundu TK, Dasgupta D.

PLoS One. 2013;8(2):e57693. doi: 10.1371/journal.pone.0057693. Epub 2013 Feb 27.

PMID:
23460895
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DNA Topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae.

Pedersen JM, Fredsoe J, Roedgaard M, Andreasen L, Mundbjerg K, Kruhøffer M, Brinch M, Schierup MH, Bjergbaek L, Andersen AH.

PLoS Genet. 2012;8(12):e1003128. doi: 10.1371/journal.pgen.1003128. Epub 2012 Dec 20.

PMID:
23284296
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Interference between DNA replication and transcription as a cause of genomic instability.

Lin YL, Pasero P.

Curr Genomics. 2012 Mar;13(1):65-73. doi: 10.2174/138920212799034767.

PMID:
22942676
[PubMed]
Free PMC Article
5.

Rates of gyrase supercoiling and transcription elongation control supercoil density in a bacterial chromosome.

Rovinskiy N, Agbleke AA, Chesnokova O, Pang Z, Higgins NP.

PLoS Genet. 2012;8(8):e1002845. doi: 10.1371/journal.pgen.1002845. Epub 2012 Aug 16.

PMID:
22916023
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The importance of being supercoiled: how DNA mechanics regulate dynamic processes.

Baranello L, Levens D, Gupta A, Kouzine F.

Biochim Biophys Acta. 2012 Jul;1819(7):632-8. doi: 10.1016/j.bbagrm.2011.12.007. Epub 2012 Jan 3. Review.

PMID:
22233557
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes.

García-Rubio ML, Aguilera A.

Nucleic Acids Res. 2012 Feb;40(3):1050-64. doi: 10.1093/nar/gkr840. Epub 2011 Oct 13.

PMID:
21998294
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Transcriptional inhibition by DNA torsional stress.

Roca J.

Transcription. 2011 Mar;2(2):82-85.

PMID:
21468234
[PubMed]
Free PMC Article
9.

Cellular strategies for regulating DNA supercoiling: a single-molecule perspective.

Koster DA, Crut A, Shuman S, Bjornsti MA, Dekker NH.

Cell. 2010 Aug 20;142(4):519-30. doi: 10.1016/j.cell.2010.08.001. Review.

PMID:
20723754
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes.

Joshi RS, Piña B, Roca J.

EMBO J. 2010 Feb 17;29(4):740-8. doi: 10.1038/emboj.2009.391. Epub 2010 Jan 7.

PMID:
20057354
[PubMed - indexed for MEDLINE]
Free PMC Article
11.
12.

DNA topoisomerase II and its growing repertoire of biological functions.

Nitiss JL.

Nat Rev Cancer. 2009 May;9(5):327-37. doi: 10.1038/nrc2608. Epub 2009 Apr 20. Review.

PMID:
19377505
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum.

André G, Even S, Putzer H, Burguière P, Croux C, Danchin A, Martin-Verstraete I, Soutourina O.

Nucleic Acids Res. 2008 Oct;36(18):5955-69. doi: 10.1093/nar/gkn601. Epub 2008 Sep 23.

PMID:
18812398
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity.

Mondal N, Zhang Y, Jonsson Z, Dhar SK, Kannapiran M, Parvin JD.

Nucleic Acids Res. 2003 Sep 1;31(17):5016-24.

PMID:
12930951
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae.

Chávez S, García-Rubio M, Prado F, Aguilera A.

Mol Cell Biol. 2001 Oct;21(20):7054-64.

PMID:
11564888
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Cell-free transcription at 95 degrees: thermostability of transcriptional components and DNA topology requirements of Pyrococcus transcription.

Hethke C, Bergerat A, Hausner W, Forterre P, Thomm M.

Genetics. 1999 Aug;152(4):1325-33.

PMID:
10430563
[PubMed - indexed for MEDLINE]
Free PMC Article
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19.

DNA topoisomerase I controls the kinetics of promoter activation and DNA topology in Saccharomyces cerevisiae.

Di Mauro E, Camilloni G, Verdone L, Caserta M.

Mol Cell Biol. 1993 Nov;13(11):6702-10.

PMID:
8413266
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Identification of barriers to rotation of DNA segments in yeast from the topology of DNA rings excised by an inducible site-specific recombinase.

Gartenberg MR, Wang JC.

Proc Natl Acad Sci U S A. 1993 Nov 15;90(22):10514-8.

PMID:
8248138
[PubMed - indexed for MEDLINE]
Free PMC Article

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