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The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae.

Gartenberg MR, Smith JS.

Genetics. 2016 Aug;203(4):1563-99. doi: 10.1534/genetics.112.145243.


The Transcription Factor THO Promotes Transcription Initiation and Elongation by RNA Polymerase I.

Zhang Y, French SL, Beyer AL, Schneider DA.

J Biol Chem. 2016 Feb 5;291(6):3010-8. doi: 10.1074/jbc.M115.673442. Epub 2015 Dec 9.


Regulation of ribosomal DNA amplification by the TOR pathway.

Jack CV, Cruz C, Hull RM, Keller MA, Ralser M, Houseley J.

Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):9674-9. doi: 10.1073/pnas.1505015112. Epub 2015 Jul 20.


Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat.

Jakociunas T, Domange Jordö M, Aït Mebarek M, Bünner CM, Verhein-Hansen J, Oddershede LB, Thon G.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):E4465-73. doi: 10.1073/pnas.1315581110. Epub 2013 Nov 4.


Yeast sirtuins and the regulation of aging.

Wierman MB, Smith JS.

FEMS Yeast Res. 2014 Feb;14(1):73-88. doi: 10.1111/1567-1364.12115. Epub 2013 Nov 14. Review.


Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae.

Hamperl S, Brown CR, Garea AV, Perez-Fernandez J, Bruckmann A, Huber K, Wittner M, Babl V, Stoeckl U, Deutzmann R, Boeger H, Tschochner H, Milkereit P, Griesenbeck J.

Nucleic Acids Res. 2014 Jan;42(1):e2. doi: 10.1093/nar/gkt891. Epub 2013 Oct 7.


Structure-function analysis of Hmo1 unveils an ancestral organization of HMG-Box factors involved in ribosomal DNA transcription from yeast to human.

Albert B, Colleran C, Léger-Silvestre I, Berger AB, Dez C, Normand C, Perez-Fernandez J, McStay B, Gadal O.

Nucleic Acids Res. 2013 Dec;41(22):10135-49. doi: 10.1093/nar/gkt770. Epub 2013 Sep 9.


Spatial telomere organization and clustering in yeast Saccharomyces cerevisiae nucleus is generated by a random dynamics of aggregation-dissociation.

Hozé N, Ruault M, Amoruso C, Taddei A, Holcman D.

Mol Biol Cell. 2013 Jun;24(11):1791-800, S1-10. doi: 10.1091/mbc.E13-01-0031. Epub 2013 Apr 10.


The SWI/SNF chromatin remodeling complex influences transcription by RNA polymerase I in Saccharomyces cerevisiae.

Zhang Y, Anderson SJ, French SL, Sikes ML, Viktorovskaya OV, Huband J, Holcomb K, Hartman JL 4th, Beyer AL, Schneider DA.

PLoS One. 2013;8(2):e56793. doi: 10.1371/journal.pone.0056793. Epub 2013 Feb 20.


RNAP-II molecules participate in the anchoring of the ORC to rDNA replication origins.

Mayan MD.

PLoS One. 2013;8(1):e53405. doi: 10.1371/journal.pone.0053405. Epub 2013 Jan 4.


Targeting of the human coagulation factor IX gene at rDNA locus of human embryonic stem cells.

Liu X, Wu Y, Li Z, Yang J, Xue J, Hu Y, Feng M, Niu W, Yang Q, Lei M, Xia J, Wu L, Liang D.

PLoS One. 2012;7(5):e37071. doi: 10.1371/journal.pone.0037071. Epub 2012 May 16.


RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability.

Wahba L, Amon JD, Koshland D, Vuica-Ross M.

Mol Cell. 2011 Dec 23;44(6):978-88. doi: 10.1016/j.molcel.2011.10.017.


Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery.

Houseley J, Tollervey D.

Nucleic Acids Res. 2011 Nov 1;39(20):8778-91. doi: 10.1093/nar/gkr589. Epub 2011 Jul 17.


The transcription elongation factor Spt5 influences transcription by RNA polymerase I positively and negatively.

Anderson SJ, Sikes ML, Zhang Y, French SL, Salgia S, Beyer AL, Nomura M, Schneider DA.

J Biol Chem. 2011 May 27;286(21):18816-24. doi: 10.1074/jbc.M110.202101. Epub 2011 Apr 5.


RNA polymerase I-specific subunits promote polymerase clustering to enhance the rRNA gene transcription cycle.

Albert B, Léger-Silvestre I, Normand C, Ostermaier MK, Pérez-Fernández J, Panov KI, Zomerdijk JC, Schultz P, Gadal O.

J Cell Biol. 2011 Jan 24;192(2):277-93. doi: 10.1083/jcb.201006040.


Alternative chromatin structures of the 35S rRNA genes in Saccharomyces cerevisiae provide a molecular basis for the selective recruitment of RNA polymerases I and II.

Goetze H, Wittner M, Hamperl S, Hondele M, Merz K, Stoeckl U, Griesenbeck J.

Mol Cell Biol. 2010 Apr;30(8):2028-45. doi: 10.1128/MCB.01512-09. Epub 2010 Feb 12.


RNA polymerase I transcription silences noncoding RNAs at the ribosomal DNA locus in Saccharomyces cerevisiae.

Cesarini E, Mariotti FR, Cioci F, Camilloni G.

Eukaryot Cell. 2010 Feb;9(2):325-35. doi: 10.1128/EC.00280-09. Epub 2009 Dec 28.


Opposing role of condensin and radiation-sensitive gene RAD52 in ribosomal DNA stability regulation.

Tsang CK, Zheng XF.

J Biol Chem. 2009 Aug 14;284(33):21908-19. doi: 10.1074/jbc.M109.031302. Epub 2009 Jun 11.


Limiting the extent of the RDN1 heterochromatin domain by a silencing barrier and Sir2 protein levels in Saccharomyces cerevisiae.

Biswas M, Maqani N, Rai R, Kumaran SP, Iyer KR, Sendinc E, Smith JS, Laloraya S.

Mol Cell Biol. 2009 May;29(10):2889-98. doi: 10.1128/MCB.00728-08. Epub 2009 Mar 16.

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