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Results: 1 to 20 of 34

1.

Information theoretic approach to complex biological network reconstruction: application to cytokine release in RAW 264.7 macrophages.

Farhangmehr F, Maurya MR, Tartakovsky DM, Subramaniam S.

BMC Syst Biol. 2014 Jun 25;8:77. doi: 10.1186/1752-0509-8-77.

PMID:
24964861
[PubMed - in process]
Free PMC Article
2.

Complexity in cancer biology: is systems biology the answer?

Koutsogiannouli E, Papavassiliou AG, Papanikolaou NA.

Cancer Med. 2013 Apr;2(2):164-77. doi: 10.1002/cam4.62. Epub 2013 Feb 17. Review.

PMID:
23634284
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Lgr5-expressing cells are sufficient and necessary for postnatal mammary gland organogenesis.

Plaks V, Brenot A, Lawson DA, Linnemann JR, Van Kappel EC, Wong KC, de Sauvage F, Klein OD, Werb Z.

Cell Rep. 2013 Jan 31;3(1):70-8. doi: 10.1016/j.celrep.2012.12.017. Epub 2013 Jan 24.

PMID:
23352663
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Multiscale models of cell signaling.

Bajikar SS, Janes KA.

Ann Biomed Eng. 2012 Nov;40(11):2319-27. doi: 10.1007/s10439-012-0560-1. Epub 2012 Apr 3. Review.

PMID:
22476894
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Ten years of pathway analysis: current approaches and outstanding challenges.

Khatri P, Sirota M, Butte AJ.

PLoS Comput Biol. 2012;8(2):e1002375. doi: 10.1371/journal.pcbi.1002375. Epub 2012 Feb 23. Review.

PMID:
22383865
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Lipidomics: when apocrypha becomes canonical.

Alex Brown H.

Curr Opin Chem Biol. 2012 Apr;16(1-2):221-6. doi: 10.1016/j.cbpa.2012.02.003. Epub 2012 Feb 28. Review.

PMID:
22381642
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Cytopede: a three-dimensional tool for modeling cell motility on a flat surface.

Herant M, Dembo M.

J Comput Biol. 2010 Dec;17(12):1639-77. doi: 10.1089/cmb.2009.0271. Epub 2010 Oct 19.

PMID:
20958108
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A mouse macrophage lipidome.

Dennis EA, Deems RA, Harkewicz R, Quehenberger O, Brown HA, Milne SB, Myers DS, Glass CK, Hardiman G, Reichart D, Merrill AH Jr, Sullards MC, Wang E, Murphy RC, Raetz CR, Garrett TA, Guan Z, Ryan AC, Russell DW, McDonald JG, Thompson BM, Shaw WA, Sud M, Zhao Y, Gupta S, Maurya MR, Fahy E, Subramaniam S.

J Biol Chem. 2010 Dec 17;285(51):39976-85. doi: 10.1074/jbc.M110.182915. Epub 2010 Oct 5.

PMID:
20923771
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

G-protein coupled receptor signaling architecture of mammalian immune cells.

Polouliakh N, Nock R, Nielsen F, Kitano H.

PLoS One. 2009;4(1):e4189. doi: 10.1371/journal.pone.0004189. Epub 2009 Jan 14.

PMID:
19142232
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Robust spatial sensing of mating pheromone gradients by yeast cells.

Moore TI, Chou CS, Nie Q, Jeon NL, Yi TM.

PLoS One. 2008;3(12):e3865. doi: 10.1371/journal.pone.0003865. Epub 2008 Dec 4.

PMID:
19052645
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Introducing spatial information into predictive NF-kappaB modelling--an agent-based approach.

Pogson M, Holcombe M, Smallwood R, Qwarnstrom E.

PLoS One. 2008 Jun 4;3(6):e2367. doi: 10.1371/journal.pone.0002367.

PMID:
18523553
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Operating regimes of signaling cycles: statics, dynamics, and noise filtering.

Gomez-Uribe C, Verghese GC, Mirny LA.

PLoS Comput Biol. 2007 Dec;3(12):e246.

PMID:
18159939
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A versatile approach to multiple gene RNA interference using microRNA-based short hairpin RNAs.

Zhu X, Santat LA, Chang MS, Liu J, Zavzavadjian JR, Wall EA, Kivork C, Simon MI, Fraser ID.

BMC Mol Biol. 2007 Oct 30;8:98.

PMID:
17971228
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The Molecule Pages database.

Saunders B, Lyon S, Day M, Riley B, Chenette E, Subramaniam S, Vadivelu I.

Nucleic Acids Res. 2008 Jan;36(Database issue):D700-6. Epub 2007 Oct 26. Erratum in: Nucleic Acids Res.2008 Apr;36(7): 2457.

PMID:
17965093
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Empirical multiscale networks of cellular regulation.

de Bivort B, Huang S, Bar-Yam Y.

PLoS Comput Biol. 2007 Oct;3(10):1968-78.

PMID:
17953478
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An evaluation of human protein-protein interaction data in the public domain.

Mathivanan S, Periaswamy B, Gandhi TK, Kandasamy K, Suresh S, Mohmood R, Ramachandra YL, Pandey A.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S19.

PMID:
17254303
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Both ligand- and cell-specific parameters control ligand agonism in a kinetic model of g protein-coupled receptor signaling.

Kinzer-Ursem TL, Linderman JJ.

PLoS Comput Biol. 2007 Jan 12;3(1):e6.

PMID:
17222056
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The alliance for cellular signaling plasmid collection: a flexible resource for protein localization studies and signaling pathway analysis.

Zavzavadjian JR, Couture S, Park WS, Whalen J, Lyon S, Lee G, Fung E, Mi Q, Liu J, Wall E, Santat L, Dhandapani K, Kivork C, Driver A, Zhu X, Chang MS, Randhawa B, Gehrig E, Bryan H, Verghese M, Maer A, Saunders B, Ning Y, Subramaniam S, Meyer T, Simon MI, O'Rourke N, Chandy G, Fraser ID.

Mol Cell Proteomics. 2007 Mar;6(3):413-24. Epub 2006 Dec 27.

PMID:
17192258
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

SigFlux: a novel network feature to evaluate the importance of proteins in signal transduction networks.

Liu W, Li D, Zhang J, Zhu Y, He F.

BMC Bioinformatics. 2006 Nov 27;7:515.

PMID:
17129367
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Parameter estimate of signal transduction pathways.

Arisi I, Cattaneo A, Rosato V.

BMC Neurosci. 2006 Oct 30;7 Suppl 1:S6. Review.

PMID:
17118160
[PubMed - indexed for MEDLINE]
Free PMC Article
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